Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00471 ATGGCTACCACTACTGCTCCTTCCCGTCAGCTTACTCAAAAGGAAGCTGACATCCAGATGATGTTGGCTGCCGATGTTCACCTCGGTACCAAGAACTGTAACTTCCAGATGGAGCGTTACATTTTTAAACGCCGCAATGATGGTATTTATATCATAAATCTTGGAAAGACATGGGATAAACTTAACCTTGCTGCTAGGATCATTGTTGCCATTGAGAATTCTCAGGACATCATTGTTCAATCTGCAAGACCTTATGGACAAAGAGCTGTTCTCAAATTTGCTCAGTACACTGGAGCTCATGCTATTGCTGGAAGGCACACTCCTGGAACCTTCACCAATCAGCTACAAACTTCCTTCAGTGAACCTAGGTTGCTTATCCTCACCGATCCAAGAACAGATCACCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCCACCATTGCTTTCTGTGACACCGATTCTCCAATGAATTATGTTGACATTGGAATTCCTGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGTACTATTAGGCCTGGCCTCAAATGGGATGTTATGGTCGATCTATTCTTCTACAGAGAACCCGAAGAGGCCAAGCAGCCAGAGGAGGATGAAGTTGCTGCACCAGATTATGCCATTGCTGACTTCAATGTATCTGCTATTCCCTCTGATGGTCAGTGGCCCGCTGCAATCGATCAACCATGGAATGATGCTGTTCCACAACCTATTCCGGCAGTTCCTGCAGTCAACTGGGCAGCCCCAGAAGCTGTTGCAGGAGACTGGGGTGAAGCTGTTCCACCACCACAACAAATTCCTACAGCTGGAATTGAATCTGTGCCAGCAACAGGATGGGAATAA 903 0.4629 MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDKLNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDGQWPAAIDQPWNDAVPQPIPAVPAVNWAAPEAVAGDWGEAVPPPQQIPTAGIESVPATGWE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00471 300 PANTHER 40S RIBOSOMAL PROTEIN SA 9 290 - -
Car08g00471 300 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 Gene3D - 17 223 - -
Car08g00471 300 TIGRFAM uS2_euk_arch: ribosomal protein uS2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Car08g00471 300 Hamap 40S ribosomal protein SA [rps-0]. 5 269 IPR027498 GO:0003735|GO:0006412|GO:0015935
Car08g00471 300 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Car08g00471 300 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 MobiDBLite consensus disorder prediction 275 300 - -
Car08g00471 300 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car08g00471 300 PANTHER 40S RIBOSOMAL PROTEIN SA 9 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00471 Car-Chr8 3946831 3949729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00471 8 300 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.727 7.41e-151 422