Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00465 ATGAACACAACAATCACCAGAAAAGAAATGGATCGGATCAAAGGCCCATGGAGTCCAGAAGAAGACGAAGCTCTCCAAAACCTCGTTGAGAAGCACGGTCCGAGAAACTGGTCTTTAATTAGCAAATCCATTCCGGGCCGGTCTGGGAAATCCTGCAGGCTTCGTTGGTGTAATCAACTCTCTCCTCAGGTAGAGCACCGGGCCTTCACACCTGAAGAGGATGATACTATAGTCAGAGCCCATGCCCGTTTCGGAAATAAATGGGCCACAATAGCCCGTCTTTTATCTGGCCGAACAGACAACGCTATTAAAAACCACTGGAACTCTACTTTAAAACGTAAGTGCTCTTCCATCATGATCGATGAATCTCAACCGTTGAAAAGATCGGTTAGTGCTGGTGCTGCTATACCTGTTTCCACTGGACTTTACATGAACCCTCCCACACCTGGTAGTCCTTCCGGATCCGATGTGAGTGAGTCCAGCGTACCAGTTGTGTCGTCATCACATATTTACCGACCCGTTCCAAGGACAGTTACGATTCTACCCCCGGTAGAAACGACGTCGTCTTCAAAATCCAATGATCCTCCAACTTCGTTATCACTTTCACTTCCCGGCGTCGATTCTTCATCCGAAGATTCTAACCGCGTAACTGAAAAAACAAATCCCGTACCGCCGCCGCCTCAACCGCCAAGTGCGATTCCGATTCCTCTGCTGCCGATAATGACGGCACCGACGGTTTCTATACCGATGGCGGTTCCGATGCATCAGTTTAACGAAGCTCAGAGGGGATCGGTCGTGCCGTTTAATTTCAGTTCGGAGTTGTTGACAGTGATGCAGGAAATGATAAGGACGGAGGTGAGGAGTTACATGGCGGGATTGGAGCAGCAGAATGGGATGTGTTATCAAAAAAATGATGATGGTTTTAGGAATGGTTCGGTGAAGAGAATTGGAATTAGCAGGATCGATTCGTAA 972 0.4805 MNTTITRKEMDRIKGPWSPEEDEALQNLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDESQPLKRSVSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSVPVVSSSHIYRPVPRTVTILPPVETTSSSKSNDPPTSLSLSLPGVDSSSEDSNRVTEKTNPVPPPPQPPSAIPIPLLPIMTAPTVSIPMAVPMHQFNEAQRGSVVPFNFSSELLTVMQEMIRTEVRSYMAGLEQQNGMCYQKNDDGFRNGSVKRIGISRIDS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00465 323 MobiDBLite consensus disorder prediction 143 168 - -
Car08g00465 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Car08g00465 323 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Car08g00465 323 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Car08g00465 323 SMART sant 65 113 IPR001005 -
Car08g00465 323 SMART sant 13 62 IPR001005 -
Car08g00465 323 MobiDBLite consensus disorder prediction 184 219 - -
Car08g00465 323 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 6 292 - -
Car08g00465 323 CDD SANT 68 111 IPR001005 -
Car08g00465 323 Gene3D - 67 131 - -
Car08g00465 323 Gene3D - 13 65 - -
Car08g00465 323 PANTHER MYB PROTEIN-RELATED 6 292 - -
Car08g00465 323 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Car08g00465 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Car08g00465 323 MobiDBLite consensus disorder prediction 184 232 - -
Car08g00465 323 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Car08g00465 323 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Car08g00465 323 MobiDBLite consensus disorder prediction 144 167 - -
Car08g00465 323 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00465 Car-Chr8 3908298 3909269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00465 6 322 MYB Transcription Factor Family AT4G37260 51.156 1.12e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g00465 Myb_DNA-binding 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00465 K09422 - gmx:780556 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01412 07 13269146 13270155 Car08g00465 08 3908298 3909269 ECH
Car08g00465 08 3908298 3909269 Car08g00465 08 3908298 3909269 ECH
Car07g01412 07 13269146 13270155 Car08g00465 08 3908298 3909269 PCT