Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00456 ATGTCTAATCAACAACAGCCTCTATTACTTGAAGAAACCGCTTACGATTCATCCGAAAAAGTAATCGTAGTTGGAGACGAAGATTACGAAGCTGACGTGGACAACGGTATTCGAATCCCACCTTTTTCATGGAAGAAACTATGGCTATTCAGTGGCCCTGGTTTTCTAATGAGTATAGCTTTTCTAGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCTATTGCTGGTTATTCTCTTTTATGGCTTCTTATGTGGGCCACGGCTATGGGACTTCTTATTCAGCTTTTGTCTGCAAGGTTAGGTGTTGCTACTGGTAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTAGTTGGGCTAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTTTGATTGGTTCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATTAGGATTTTGAGTAATGGTCTTGTTCCTCTTTGGGCTGGGGTTGTCATCACAGCTTTAGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTGATTGCTATAATGGCTCTCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCAGACGGGGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTAGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGGCAGGTTGATCCGAAAAAGAAAGGCCGTGTTCAAGAAGCTATAAATTACTACTCCATAGAGTCTACCATTGCCCTTGTTGTCTCCTTTGTCATCAATATATTCGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACCGAAATAGCGAATCGCATCGGTCTGGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGAGGTGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAAAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGTTTTCTGAATTTGAAGTTGAAGAAATGGATAAGGGCGTTGATTACGCGGAGTTTTGCAATCATCCCAACCATGATTGTTGCTCTTATATTCGATACCTCAGAGGATTCATTGGATCTTCTGAATGAATGGCTCAATGTTCTTCAGTCAGTGCAAATCCCCTTTGCATTGATTCCCTTGCTTTGTTTGGTGTCGAAGGAACAGATAATGGGCACCTTCAAGATTGGGTCTGGCCTCAAGATTATATCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCTCTGAAGTGAATGGAGCAGTGCTCACCACTATTGTGTCCACAATAACAGCTGCATATGTTGCATTCATAATTTACCTTATTTCAAGTGCCTTTACCTTTTCACCTTGGCAAAGTTTAACTCAATCAAAGACAGTTGTTACCGCGGAGAGTTAA 1521 0.4103 MSNQQQPLLLEETAYDSSEKVIVVGDEDYEADVDNGIRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPSWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEAINYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWIRALITRSFAIIPTMIVALIFDTSEDSLDLLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSGLKIISWLVAALVIVINGYLLLEFFSSEVNGAVLTTIVSTITAAYVAFIIYLISSAFTFSPWQSLTQSKTVVTAES 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00456 506 Pfam Natural resistance-associated macrophage protein 68 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 11 506 - -
Car08g00456 506 Hamap Divalent metal cation transporter MntH [mntH]. 33 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PRINTS Natural resistance-associated macrophage protein signature 156 175 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PRINTS Natural resistance-associated macrophage protein signature 181 202 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PRINTS Natural resistance-associated macrophage protein signature 337 356 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PRINTS Natural resistance-associated macrophage protein signature 365 382 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 11 506 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car08g00456 506 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00456 Car-Chr8 3825718 3829814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00456 20 499 Inorganic Solute Cotransporters AT2G23150 79.710 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00456 K21398 - gmx:100789871 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00456 08 3825718 3829814 Car08g00456 08 3825718 3829814 ECH
Car08g00456 08 3825718 3829814 Car07g01399 07 13118108 13121963 PCT