Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00441 ATGAGTTGCAACGGTTGTAGAGTCCTTCGAAAGGGTTGTAGTGAGTCATGTATCTTACGCCCTTGTCTTCAATGGATCGATACACCCGAAGCCCAAGGTCACGCCACTGTCTTTGTAGCCAAATTTTTCGGCCGTGCAGACCTTATGTCTTTCATTTCCAACGTACCCCAACCTCAAAGACCCGCTCTTTTTCAGTCTCTGTTGTTGGAAGCGTGTGGACGAACGGTGAACCCTGTTAACGGTGCCGTTGGACTTTTATGGACAGGAAACTGGCACGTGTGCCAAGCGGCGGTGGAAACCGTGCTTCGTGGCGGAACCCCGAGACCTATACCGGAGTTTCTCGGTTTAGATGCTCTTACCTCCACCGCCGACGACGCATCCGAAGGGGAAGTGACATGTAACGACGCGCGGAAGGTTCAAGATCCGAACCAGAATTCAAGATTCGTGAGTTCGCGGTCTAATAAGGTCGCTTCCGGGGGTAAACGCAAGCGATATGATTTTGCGACGACCGATCTTAATCTCAGGTTGACGCCGTGTTTTTTGCAGAACGCGTTGACTAGCAGTTGTCGGAGGGAAATTCGCCGGCCGGGAACACCGTCGATGAATTCTGAGGAATCTGTGACGACGATGACGAGCTTGGAAAGCGGGATCGGAGATCAATATGTTAACGACGGAGACCGGAAAGTGCTCAACCTTTTTGTTTGA 705 0.5135 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLLEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTPRPIPEFLGLDALTSTADDASEGEVTCNDARKVQDPNQNSRFVSSRSNKVASGGKRKRYDFATTDLNLRLTPCFLQNALTSSCRREIRRPGTPSMNSEESVTTMTSLESGIGDQYVNDGDRKVLNLFV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00441 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Car08g00441 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 234 - -
Car08g00441 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Car08g00441 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00441 Car-Chr8 3678559 3680051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00441 1 234 AS2 family AT3G49940 55.906 3.00e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car08g00441 LOB 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00441 - - gmx:100816189 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01382 07 12923879 12925328 Car08g00441 08 3678559 3680051 ECH
Car08g00441 08 3678559 3680051 Car08g00441 08 3678559 3680051 ECH
Car07g01382 07 12923879 12925328 Car08g00441 08 3678559 3680051 PCT