Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00439 ATGGCCATTAGGCCTTTCCAATCCACCTTGTCGCTCGATAGATTCGTCTCTTTTTTCCGCACTCCTCGTTCATTTTCATCCTCCACCACCAATTTTCCCGTTTTCCCCACTTTCTTCCGTCGTCGCTTCGCCGTCTCTTCTTCAAATTCATCCCCACGACCTCCTCACCGCTCCCACCCTCCTCCGCTCCCTCCCTCTGACACTATGGCGCTAAAGATTGGAAAATCCACTCGCCGTCCCGGTGCCACCTCCAAAGCTAGGATTTACGCTGATATCAATGTTGTTCGCCCTAAGGAATATTGGGACTACGAATCCCTCGCCATTCAGTGGGGAGAACAAGATGATTATGAGGTTGTGAGGGAAGTTGGAAGAGGAAAATACAGTGAGGTGTTTGAAGGTGTTCACTGTACGGATAATGAAAAATGTGTCGTCAAGATCCTGAAACCTGTTAAGAAGAAGAAGATAAAGAGGGAGATCAAGATATTGCAAAATCTGTGTGGAGGACCCAACATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCAAAGACCCCTAGCCTTGTATTTGAATATGTTAATAATACCGATTTTAAAGTGCTCTATCCTACCTTGTCAGATTACGATATACGATACTATATCTACGAACTTCTAAAGGCATTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCGCATAATGTAATGATCGACCACGAGCAGCGTAAGCTTCGCCTTATAGACTGGGGACTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTTCGCGTTTCCTCGAGATATTTCAAAGGTCCTGAGCTACTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGTCTCTGGGTTGTATGGTTGCTGGAATGATATTCCAGAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTAGTGAAAATAGCCAAGgtacttgggtcagatgaattaaatgcatatttgaacaagtatcgcatagagttggatccgcaatttgcagtgcttgttgggaGGAATGGCCGGAGGCCATGGGCAAAGTTCATCAATAGGAATAATCACCACTTGGCTGTTCCTGAGGCTATTGACTTTGTTGACAAGTTACTACAGTTTGATCATCAAGAACGGCCCACTGCAAAAGAAGCTATGGCCCACCCCTACTTCAATCCAGCCGAAAAGTCTTCAAACGTGGTGAAGCTCGATTTAATTCTGTCCTCAAGTTTCATCAAAATACCTCTCACTTTTTGGGCAAAATCCAGGGTTTGCGAGTTCCTTATTCTTTTGTAG 1326 0.4118 MAIRPFQSTLSLDRFVSFFRTPRSFSSSTTNFPVFPTFFRRRFAVSSSNSSPRPPHRSHPPPLPPSDTMALKIGKSTRRPGATSKARIYADINVVRPKEYWDYESLAIQWGEQDDYEVVREVGRGKYSEVFEGVHCTDNEKCVVKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLVFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVSSRYFKGPELLVDLQDYDYSLDLWSLGCMVAGMIFQKEPFFYGHDNYDQLVKIAKVLGSDELNAYLNKYRIELDPQFAVLVGRNGRRPWAKFINRNNHHLAVPEAIDFVDKLLQFDHQERPTAKEAMAHPYFNPAEKSSNVVKLDLILSSSFIKIPLTFWAKSRVCEFLILL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00439 441 Pfam Protein kinase domain 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00439 441 Gene3D Phosphorylase Kinase; domain 1 116 192 - -
Car08g00439 441 PANTHER CASEIN KINASE II SUBUNIT ALPHA 63 404 IPR045216 GO:0004674|GO:0006468
Car08g00439 441 CDD STKc_CK2_alpha 97 401 IPR045216 GO:0004674|GO:0006468
Car08g00439 441 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Car08g00439 441 ProSiteProfiles Protein kinase domain profile. 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00439 441 Gene3D Transferase(Phosphotransferase) domain 1 193 401 - -
Car08g00439 441 SUPERFAMILY Protein kinase-like (PK-like) 89 403 IPR011009 -
Car08g00439 441 PANTHER BNAA04G13490D PROTEIN 63 404 - -
Car08g00439 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Car08g00439 441 MobiDBLite consensus disorder prediction 46 71 - -
Car08g00439 441 SMART serkin_6 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00439 Car-Chr8 3648573 3656117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00439 114 408 Core Cell Cycle Gene Families AT1G76540 30.031 4.39e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Car08g00439 Pkinase 8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00439 K03097 - gmx:100776388 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00439 08 3648573 3656117 Car08g00439 08 3648573 3656117 ECH