Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00429 ATGATGGAGGATTATTTACAAAAGAATTTTGGAAGAGTAAAGTCGAAAAACTCATCTGAAGAAGCTCTTCGAAGATGGAGAGAAGCATGCGGAGTTGTAAAGAACCCCAAAAGACGCTTTCGTTTCACTGCCAATCTCCAAAAGAGGGGCGAAGCTGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTGGCAGTTTTGGTTTCCAAAGCAGCATTTCAGTTTATGCAAGCCGCGCAACAAAGCGATTACAAAGTGCCAGAGGAAGTTAAAGATGCAGGATTCCAAATCTGTGGTGATGAATTGGGGTCTATTGTTGAAGGCCATGATGTAAAGAAGTTGAAATATCATGGTGGGATTAATGGCATTGCAGAAAAGCTTTCTGCATCAACCACTGACGGGCTCAGCGTTGATTCTGATTTGCTGAATCGGAGACAAGAGATATATGGAATCAATAAATTCACCGAAAGTCAAGCTAAAAGCTTTTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATACTTGGAGTGTGTGCTCTTGTGTCTCTGATAGTTGGCATTGCAACAGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTATTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCTTTACAGTTCAAGGATTTGGACAAGGAGAAGAAGAAAATTTCCATTCAGGTCACAAGAAATAGATATAGGCAGAAAATGTCTATATATGAGTTACTTCCTGGCGATATCGTGCATCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCGGGATTTTCTGTGTTGATCGACGAGTCAAGTTTAACAGGAGAGAGTGAGCCTGTGGTTGTGAACACTGAAAATCCATTTCTTCTTTCAGGAACCAAAGTCCAAGATGGATCATGCAAGATGTTGGTTACCACAGTAGGAATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGCGATGATGAAACCCCGTTACAGGTGAAACTAAACGGAGTGGCAACCATTATTGGGAAGATAGGCCTATTCTTCGCCATTGTTACTTTTGCAGTTCTGGTTCAAGGACTTGTGAGCCTTAAACTCCAACAAGGAAGCTTCTGGAGCTGGAATGGGGATGATGCTTTGGAGATGTTGGAGTTCTTTGCAATTGCGGTCACTATCGTTGTTGTTGCTGTTCCAGAAGGGCTTCCATTAGCTGTGACATTGAGCCTTGCATTTGCAATGAAAAAAATGATGAATGATAAAGCCCTTGTCCGAAATTTGGCAGCTTGTGAGACAATGGGATCAGCCACAACTATATGTAGTGACAAAACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGTATGAAGAGTAAGGAAATAAGCAACAAGACTTCTTCTAGTTTGTGCTCTGAACTCCCAGAGTCTGTTGTTAAAACGCTGCTACAGTCAATATTTAACAACACAGGAGGAGAGGTCGTGGTTAACAAAGAAGGTAAACATGAGATTTTAGGAACCCCGACCGATACTGCAATATTGGAGTTTGGCTTGTCATTAGGTGGTGATTTTCAAGGAGAGAAACAAGCATGCAAAATTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGAATGGGTGTAGTGGTGGAGCTCCCTAGTGGAGGTTTAAGAGCTCACTGTAAAGGTGCTTCTGAAATAGTTCTTGCTTCCTGTGACAAAGTTCTCAATTCAAACGGCGAGGTTGTCCCACTTGATGAAGAATCAACTAACCATCTTAAGACTACAATAAACCAGTTTGCTAATGAGGCACTTAGAACTTTATGCCTTGCATATGTGGAATTGGAAAATGGGTTCTCTGCTGAAGACTCCATTCCTGTTACTGGATACACTTGTATAGGAGTTGTCGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTAGCACTATGCCGTTCAGCTGGAATAACAGTAAGAATGGTTACAGGTGACAATATTAATACTGCGAAGGCTATAGCAAGGGAATGTGGTATTTTAACAGATGATGGTATAGCCATTGAAGGTCCAGAATTTAGAGAGAAGAGTATGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAGGTCATGGCTCGATCCTCACCTTTAGACAAGCATACATTGGTAAAACACTTGCGTACCACATTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACGAATGATGCCCCAGCCCTTCATGAAGCAGACATTGGACTTGCCATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACAATAGTAACAGTGGCCAAATGGGGACGTTCTGTTTACATAAATATTCAGAAATTTGTACAGTTTCAGCTTACAGTTAACGTTGTTGCTTTAATAGTGAACTTTACATCAGCCTGCTTGACAGGTACTGCTCCCCTCACTGCTGTTCAACTTTTGTGGGTGAACATGATAATGGATACATTGGGAGCACTTGCGCTCGCAACTGAACCTCCAAATGATGATTTAATGAAGCGCTCACCCGTCGGAAGAAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTAGGACAATCACTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAAAGGAAAATCTATCTTTGCGCTTGATGGCCCTAATTCGAATCTAGTCTTAAACACACTTATCTTCAACTCATTTGTATTCTGTCAGGTTTTCAATGAGATAAACTCTCGCGAGATGGAGAAAATTAATGTTTTTAAAGGCATATTGGATAATTATGTCTTTGTGGGTGTCATCAGTACTACAATTCTATTTCAAATCATAATAGTAGAGTACTTGGGAACTTTTGCAAACACAACACCTCTCAGTCTGGTACAGTGGTTCTTCTGCTTGTTTGTTGGGTTTATGGGCATGCCTATTGCTGCTCGCTTAAAGAAGATATCTGTCTGA 3051 0.4163 MMEDYLQKNFGRVKSKNSSEEALRRWREACGVVKNPKRRFRFTANLQKRGEAAAMRRTNQEKLRVAVLVSKAAFQFMQAAQQSDYKVPEEVKDAGFQICGDELGSIVEGHDVKKLKYHGGINGIAEKLSASTTDGLSVDSDLLNRRQEIYGINKFTESQAKSFWVFVWEALQDMTLMILGVCALVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNRYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVVVNTENPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIVTFAVLVQGLVSLKLQQGSFWSWNGDDALEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMKSKEISNKTSSSLCSELPESVVKTLLQSIFNNTGGEVVVNKEGKHEILGTPTDTAILEFGLSLGGDFQGEKQACKIVKVEPFNSTKKRMGVVVELPSGGLRAHCKGASEIVLASCDKVLNSNGEVVPLDEESTNHLKTTINQFANEALRTLCLAYVELENGFSAEDSIPVTGYTCIGVVGIKDPVRPGVKESVALCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSMEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSKGKSIFALDGPNSNLVLNTLIFNSFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISTTILFQIIIVEYLGTFANTTPLSLVQWFFCLFVGFMGMPIAARLKKISV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00429 1016 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 1015 - -
Car08g00429 1016 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 726 841 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00429 1016 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 546 700 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00429 1016 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 206 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00429 1016 Gene3D - 141 337 - -
Car08g00429 1016 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Car08g00429 1016 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Car08g00429 1016 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Car08g00429 1016 PRINTS P-type cation-transporting ATPase superfamily signature 652 663 - -
Car08g00429 1016 PRINTS P-type cation-transporting ATPase superfamily signature 674 684 - -
Car08g00429 1016 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Car08g00429 1016 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Car08g00429 1016 SFLD C1.7: P-type atpase like 436 807 - -
Car08g00429 1016 Pfam Cation transport ATPase (P-type) 515 593 - -
Car08g00429 1016 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 50 IPR024750 GO:0005516
Car08g00429 1016 Pfam Cation transporting ATPase, C-terminus 840 1013 IPR006068 -
Car08g00429 1016 SUPERFAMILY Calcium ATPase, transduction domain A 240 334 IPR008250 -
Car08g00429 1016 PANTHER CATION TRANSPORTING ATPASE 5 1015 - -
Car08g00429 1016 SMART Cation_ATPase_N_a_2 115 191 IPR004014 -
Car08g00429 1016 Pfam Cation transporter/ATPase, N-terminus 117 186 IPR004014 -
Car08g00429 1016 Gene3D - 18 78 - -
Car08g00429 1016 SUPERFAMILY HAD-like 452 860 IPR036412 -
Car08g00429 1016 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Car08g00429 1016 Pfam E1-E2 ATPase 238 432 - -
Car08g00429 1016 CDD P-type_ATPase_Ca_PMCA-like 143 888 - -
Car08g00429 1016 Gene3D - 451 800 IPR023214 -
Car08g00429 1016 SFLD p-type atpase 436 807 IPR044492 -
Car08g00429 1016 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 664 IPR023299 GO:0000166
Car08g00429 1016 Gene3D - 169 1006 - -
Car08g00429 1016 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1014 IPR023298 -
Car08g00429 1016 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00429 1016 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00429 1016 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00429 1016 Gene3D - 464 659 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00429 Car-Chr8 3554944 3560796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00429 2 1016 Primary Pumps ATPases AT4G37640 81.791 0.0 1720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00429 K01537 - gmx:547567 1818.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00429 08 3554944 3560796 Car08g00429 08 3554944 3560796 ECH
Car08g00429 08 3554944 3560796 Car07g01376 07 12841718 12846323 PCT