Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00424 ATGGGGAAGAAGCAGCATAGCAAAGACCGAATGTTCATAACCAAAACAGAATGGGCAACGGAATGGGGAGGTGCCAAATCCAAAGAAATTCGCACCCCTTTCAAACGCCTTCCCTTTTATTGCTGCGCACTTACATTTACACCGTTTGAGTTTCCAGTTTGTACACCTGATGGCAGCGTTTTTGATGTTATGAACATAACTCCTTATATTATAAAATATGGTAAACATCCTGTCACTGGAGCTCCTTTGAAACAACAAGATCTCATTCCACTAACTTTTCACAAGAATTCTGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACACATTGTGGCAGTCAAGACTACTGGAAATGTCTTCTGCTATGAGGCTGTTAAAGAGTTAAACATCAAGAATAAAAACTGGAAGGAGCTCCTCACCGATGAAGCATTTACTAGGGATGACCTCATAACAATTCAGAATCCTAATGCACTTGACCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACTCAATTTGAAAATTGATGATGAAGAACTACAGAAAATGACTTCAGATCCAACCTATAACATAAACATGTCGGGTGATATCAAGCAAATGCTTAATGAGCTTGGAACTGAGAAAGGAAAGGAAACTGCGTTGCATGGTGGAGGCGGTGGCAAGGCACAAAAAGAAAGGGCCGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACAAGTTAAAGAAGATTCGAATCCCGATGGAGTTGCCAATGCTCCTCAGGCACTTAGTATTGTAGATGCTGCATCTGCCTCAGTACATGGTAGAAGTGCAGCTGCAGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCACGTGGCTGGTGACAGGGCGCCAGTGAATGCAAAGATGGTTAAAAGTCGTTTCACTACTGGTGCTGCTTCCCGGTCTTTCACTTCAACGTCATATGATCCAGTTACAAAAAATGATTATGAATATGAGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATTGAGCTGCATTGTGATATAACACCCAGGGCATGTGAGAACTTTATCACGCTTTGTGAACGAGGATATTATAACGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAGGGTGGTGATCCTACCGGTACTGGTAGGGGTGGTGAATCGATATGGGGAAAGCCTTTTAAGGATGAACTCAACTCCAAATTAGTCCACTCTGGAAGGGGTGTGGTTAGCATGGCAAACAGTGGCCCCCATACTAATGGTTCCCAGTTTTTCATCTTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGAGTAGTTGGTGGCTTGACTACACTAGCAGCAATGGAAAAGGTTCCTGTTGATGACAGTGACCGACCTCTGGAGGAAATCAAGATAACAGGTGTCAAAATTTTTGTCAATCCTTACACCGAACCAGATGAGGAAGAAGAGCAAGCTAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAGGTTGGCTCATGGTATAGTAATCCTGGTGCTGGAACATCTGAATCTGTTGGCGGTGGTGTAGGCAAGTACTTAAAATCTAGGAATATTCCAGGCCCAACTGAATCTGCTGCCATCGACACTGGTACAGCCGTTGTAGGAAAGAAAAGAAAAGCAGTTGTCAGTGGTGAATTTAAAGATTTTTCGTCATGGTAA 1776 0.4178 MGKKQHSKDRMFITKTEWATEWGGAKSKEIRTPFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKNKNWKELLTDEAFTRDDLITIQNPNALDQKVLLDFDHVKLNLKIDDEELQKMTSDPTYNINMSGDIKQMLNELGTEKGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSNPDGVANAPQALSIVDAASASVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRFTTGAASRSFTSTSYDPVTKNDYEYEKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDSDRPLEEIKITGVKIFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESVGGGVGKYLKSRNIPGPTESAAIDTGTAVVGKKRKAVVSGEFKDFSSW 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00424 591 Gene3D - 328 513 IPR029000 -
Car08g00424 591 MobiDBLite consensus disorder prediction 527 541 - -
Car08g00424 591 MobiDBLite consensus disorder prediction 510 526 - -
Car08g00424 591 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 348 498 IPR002130 GO:0000413|GO:0003755
Car08g00424 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Car08g00424 591 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 589 IPR044666 -
Car08g00424 591 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Car08g00424 591 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 352 499 IPR002130 GO:0000413|GO:0003755
Car08g00424 591 SUPERFAMILY RING/U-box 37 105 - -
Car08g00424 591 SUPERFAMILY Cyclophilin-like 348 508 IPR029000 -
Car08g00424 591 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 383 400 IPR020892 GO:0003755|GO:0006457
Car08g00424 591 MobiDBLite consensus disorder prediction 504 564 - -
Car08g00424 591 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Car08g00424 591 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Car08g00424 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 362 377 IPR002130 GO:0000413|GO:0003755
Car08g00424 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 388 400 IPR002130 GO:0000413|GO:0003755
Car08g00424 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 431 446 IPR002130 GO:0000413|GO:0003755
Car08g00424 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 446 458 IPR002130 GO:0000413|GO:0003755
Car08g00424 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 459 474 IPR002130 GO:0000413|GO:0003755
Car08g00424 591 CDD cyclophilin_RING 348 506 - -
Car08g00424 591 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 589 - -
Car08g00424 591 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00424 Car-Chr8 3524616 3530227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00424 1 591 U-box Gene Family AT5G67530 75.753 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00424 K10598 - gmx:100819923 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00424 08 3524616 3530227 Car08g00424 08 3524616 3530227 ECH