Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00423 ATGGATACATTGTTTAGACTTGTCAGTTTCcaacatcaacaagatcaatctctcaactcaaacaccaccataacaacaacaacaacaacaacaTCTACCTCTTCTCGTTCCTCCAAACAAAACTATCACCACAATTATTACCaagaacaagaagacgaagaagaaTGCTTCAACTTTTTCATGGATGAAGAAGACCTTTCCTCCTCCTCTTCCAAACACTACTATCCAAATTATCAACCCACCACAATTACTACAAACACCCCCACCCCTACACTCACACCCCCTCCAACTGATTTCACCTTCGAATTAACCGGTAACTGGTCCCACAACATCCTCCTTGAAACAGCACGCGCTATAGCAGAAAAAAACACCACGCGCGCTCAACAACTCATGTGGATGCTTAACGAACTAAGCTCCCCTTACGGTGACACCGAACAAAAACTATCTTCTTATTTCCTCCAAGCCTTATTCTCTCGCATCACCGAAGCTGGTAACCGAACCTTCCGAACCTTAGCTTCGGCATCGGAAAAAACGTGCTCATTCGAATCAACACGAAAAACGGTTTTGAAATTTCAAGAAGTTAGTCCTTGGAACACTTTCGGCCACGTCGCTTCCAATGGCGCAATTTTAGAAACCCTAGAAGGAGAATCCAAATTGCATATAATTGATATTAGCAACACTTATTGCACTCAATGGCCTACACTTTTCGAAGCGTTGGCCACTCGCTCCGATGATACACCTCACCTCCGATTAACCACCATAATCACCGCCACACCAGGTGGTTCCGCACAAAAAGTTATGAAGGAAATTGGTACTAGATTGGAGAAATTCGCTAGGTTAATGGGAGTTCCGTTTAAATTCAACGTTATTCATCACGCCGGCGATCTTTCTGATTTGGATTTTGGAACCTTAGATATTAAGGAAGATGAAGCGTTAGCGGTTAATTGTGTTAACGCTTTGCATTCGGTAAGTGTTATTGGTAATGGTAACCGCCGCGACGCGTTGATATCGTCGTTGATCGGGTTGAGGCCGAGGATAGTGACGGTGGTTGAAGAGGAAGCTGATTTGGATATTGGTATGGAAGGATTTGAATTTGTTAAGGGTTTTGAAGAATGTTTGAGATGGTTTAGGGTTTATTTTGAGGCATTGGAAGAGAGTTTTTCGAAGACGAGTAATGAGCGTTTGATGTTGGAAAGAGAAGCAGGGAGAGGGATTGTTGATTTGGTGGCTTGTGGTGCGGCGGAGTCGAGGGAGAGGAGGGAGACGGCGGTTCGGTGGTCGCAGCGTTTGCATGGTAGAGGATTTAACACGGTGGCGTTTAGTGATGAAGTTTGTGATGATGTGAGAGCTTTGTTGAGAAGGTATAAGGAAGGGTGGTCGATGATGCAGTGTAGTGATGCCGGAATATTCTTGACGTGGAAGGAACAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1461 0.4257 MDTLFRLVSFQHQQDQSLNSNTTITTTTTTTSTSSRSSKQNYHHNYYQEQEDEEECFNFFMDEEDLSSSSSKHYYPNYQPTTITTNTPTPTLTPPPTDFTFELTGNWSHNILLETARAIAEKNTTRAQQLMWMLNELSSPYGDTEQKLSSYFLQALFSRITEAGNRTFRTLASASEKTCSFESTRKTVLKFQEVSPWNTFGHVASNGAILETLEGESKLHIIDISNTYCTQWPTLFEALATRSDDTPHLRLTTIITATPGGSAQKVMKEIGTRLEKFARLMGVPFKFNVIHHAGDLSDLDFGTLDIKEDEALAVNCVNALHSVSVIGNGNRRDALISSLIGLRPRIVTVVEEEADLDIGMEGFEFVKGFEECLRWFRVYFEALEESFSKTSNERLMLEREAGRGIVDLVACGAAESRERRETAVRWSQRLHGRGFNTVAFSDEVCDDVRALLRRYKEGWSMMQCSDAGIFLTWKEQPVVWASAWRP 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00423 486 Pfam GRAS domain family 110 485 IPR005202 -
Car08g00423 486 PANTHER PROTEIN SHORT-ROOT 1 485 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Car08g00423 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 485 IPR005202 -
Car08g00423 486 MobiDBLite consensus disorder prediction 15 43 - -
Car08g00423 486 ProSiteProfiles GRAS family profile. 99 485 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00423 Car-Chr8 3517391 3519334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00423 1 486 GRAS Transcription Factor Family AT4G37650 59.294 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car08g00423 GRAS 4.3e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00423 - - gmx:100820459 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00423 08 3517391 3519334 Car08g00423 08 3517391 3519334 ECH
Car08g00423 08 3517391 3519334 Car07g01373 07 12807392 12809348 PCT