Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00420 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCTGGAGTAGTCAAATACGGGGCTGGAAAATGGCGCACCATACTTACGGATCCAGAGTTCAGCACCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCACTTAAAAAGAACCTACCTCCCCCCAAAACTGAAAATAACCACACAACTTCAAATGCTATAGTTCAATATAATCCAGAAGTTGCAACTGCTCAGCCTCTGGCAGTTTCTGGTGGAATGTCTTCTTCCAAAGAACAAATATCAAGATTGGACAACCTTATATTAGAGTCGATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATGGCCGCCATTGCTGCTTGCATTGAGGATCAATACCGGTCTCCACCAAACCTCATGAAGTTATTGTCAACAAAATTGAAGCATATGGTGGCAAGTGGAAAATTAATGAAGGTTAAGGATAAATACAGGATTGCAACTAACTCAACAAAAACATCGGAGAAAAGAAAATGTTCTTCCATGTTACTTCTGGAAGGGAGGCCGGAAGATTCTCCACGAGCAGAAAAGACTAATGTCAACATCCTTTCAAAATCCCAAATTGATGTTGAGCTTTTAAAAATGAAGGAAGACTTAATATATGATGATATCTCAGCTTCTGCATGGTTGAAATGA 744 0.414 MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPEFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKTENNHTTSNAIVQYNPEVATAQPLAVSGGMSSSKEQISRLDNLILESIVKLKEPKGSDMAAIAACIEDQYRSPPNLMKLLSTKLKHMVASGKLMKVKDKYRIATNSTKTSEKRKCSSMLLLEGRPEDSPRAEKTNVNILSKSQIDVELLKMKEDLIYDDISASAWLK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00420 247 Gene3D - 113 197 IPR036388 -
Car08g00420 247 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 232 - -
Car08g00420 247 CDD SANT_TRF 6 57 - -
Car08g00420 247 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car08g00420 247 SMART sant 4 59 IPR001005 -
Car08g00420 247 Pfam linker histone H1 and H5 family 121 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car08g00420 247 Gene3D - 2 59 - -
Car08g00420 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car08g00420 247 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car08g00420 247 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Car08g00420 247 SUPERFAMILY "Winged helix" DNA-binding domain 115 193 IPR036390 -
Car08g00420 247 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Car08g00420 247 PANTHER SINGLE MYB HISTONE 4 1 232 IPR044597 GO:0003691
Car08g00420 247 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00420 Car-Chr8 3460993 3464123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00420 1 232 Single Myb Histone (SMH) Gene Family AT1G49950 49.576 1.24e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car08g00420 Linker_histone 3.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00420 K09422 - gmx:778165 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00420 08 3460993 3464123 Car07g01369 07 12786122 12791220 PCT