Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00405 ATGAACTTTAACAATCTAATGAATATAGGTGTTCTTTCACACACTACTCATCAGACACAACCTTcttctgcttctgcttctgcttctgctACTGAAGCATTTGTACCAAGCTTTTATCATCACCCTACACCTCTTCATAACTATGGATATTACTATGGACTTGAAGGTGAGCATGTTGGATTGTATTCAGCCTTGCCCATCATGCCTGATGGATCCATTTATGGAATAGAAGCTCTATGTAAATCACAAGCACAAGAAGCAATGCAAGTAAGCATAGATGGTACTTTTCACAAACCAAACAATTCAAATAACATTAATCATGTGCAAGAGAATATCAGCCAACAACAACTATATTACTCTTCCTTAAGAAACCATGATGTGATGTTAGAAGGGTGCATGAAAAATCAGGTAAAAGATAGTGTTCAGCTCCCAAAAATAGTTGAGGATGAAATTTTTGGTATGAGGAGTTGGGATTCAAAGACATGTGGGTTGTCAATGAGTCCTGGTTCACAATCAAGTTGTGTTACAAGTTCACAACAGACATCACTTGCTCCCATTGATTCTGTTTCCATTGAAATGGTAGACATGAAAAAGAATCAGAACCAAACCGTTTTAAGGAATACATTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATTTATGGGATAACAGCATTAAGAAAGAGGGACAAGCTAGGAAAGGAAAGCAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGTCCCTCCACTCGTATAAATTTCCCTTTGGAAAATTATGAAAAAGAACTTGAAGAAATGAAGAAAATGACAAGACAAGAATATGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTATAGAGGAGTAACAAGCAGACACCATCAACATGGAAGATGGCAAGCTCGAATAGGAAGAGTAGCAGGAAATAAAGATCTCTACCTTGGAACCTTCACTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGCAAATGCTGTTACAAATTTTGATATAAAAATATATGATGTGGACAAAATTATATCAAGCAGTAATCTTCTTAGCAGTGAACAAGCTAAGCGAAACAGAAATATGGATGATGCAATTAACAATAAACTTTCTACATTTGAAGACATTGAAGTAACAATTCCAATTCAGAAGAGATGCAAAATACAACAACATGACCAAAATCCACCTACACAAAGCTTTGAAAGTTGCACGGTCCAATCATTTTCATTAGCTTTAGATAACATATATCACTATCAAGAAATAGATGAATCAAATCCTTCTTCATTGGTTACAAGCTTGAGTAGCTCAAGAGAAGAAAGTCCAGACAGAACAAGCTTACCAATGCTCTTTGGAATGTCATCAACAGAATCAATGCCTTCATTTTCTTTGCCTCAGATTCCATTGTCTGTCTTTGCTGCTTGGAATGATGCATGA 1548 0.363 MNFNNLMNIGVLSHTTHQTQPSSASASASATEAFVPSFYHHPTPLHNYGYYYGLEGEHVGLYSALPIMPDGSIYGIEALCKSQAQEAMQVSIDGTFHKPNNSNNINHVQENISQQQLYYSSLRNHDVMLEGCMKNQVKDSVQLPKIVEDEIFGMRSWDSKTCGLSMSPGSQSSCVTSSQQTSLAPIDSVSIEMVDMKKNQNQTVLRNTFGQRTSQYRGVTRHRWTGRYEAHLWDNSIKKEGQARKGKQGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYEKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAAEAYDIAAIKFRGANAVTNFDIKIYDVDKIISSSNLLSSEQAKRNRNMDDAINNKLSTFEDIEVTIPIQKRCKIQQHDQNPPTQSFESCTVQSFSLALDNIYHYQEIDESNPSSLVTSLSSSREESPDRTSLPMLFGMSSTESMPSFSLPQIPLSVFAAWNDA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00405 515 Gene3D AP2/ERF domain 214 280 IPR036955 GO:0003700|GO:0006355
Car08g00405 515 Gene3D AP2/ERF domain 314 376 IPR036955 GO:0003700|GO:0006355
Car08g00405 515 SUPERFAMILY DNA-binding domain 313 374 IPR016177 GO:0003677
Car08g00405 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 150 483 - -
Car08g00405 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 88 - -
Car08g00405 515 SUPERFAMILY DNA-binding domain 214 280 IPR016177 GO:0003677
Car08g00405 515 Coils Coil 279 299 - -
Car08g00405 515 CDD AP2 313 374 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 ProSiteProfiles AP2/ERF domain profile. 215 278 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 Pfam AP2 domain 215 270 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 Pfam AP2 domain 315 365 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 CDD AP2 214 278 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 MobiDBLite consensus disorder prediction 465 484 - -
Car08g00405 515 PRINTS Ethylene responsive element binding protein signature 355 375 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 PRINTS Ethylene responsive element binding protein signature 216 227 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 ProSiteProfiles AP2/ERF domain profile. 314 373 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 28 88 - -
Car08g00405 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 150 483 - -
Car08g00405 515 SMART rav1_2 314 379 IPR001471 GO:0003700|GO:0006355
Car08g00405 515 SMART rav1_2 215 284 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00405 Car-Chr8 3351266 3354536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00405 47 419 AP2-EREBP Transcription Factor Family AT4G37750 50.889 6.08e-127 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Car08g00405 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00405 K09285 - gmx:100812275 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00405 08 3351266 3354536 Car07g01358 07 12663018 12666755 PCT