LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g00405	ATGAACTTTAACAATCTAATGAATATAGGTGTTCTTTCACACACTACTCATCAGACACAACCTTcttctgcttctgcttctgcttctgctACTGAAGCATTTGTACCAAGCTTTTATCATCACCCTACACCTCTTCATAACTATGGATATTACTATGGACTTGAAGGTGAGCATGTTGGATTGTATTCAGCCTTGCCCATCATGCCTGATGGATCCATTTATGGAATAGAAGCTCTATGTAAATCACAAGCACAAGAAGCAATGCAAGTAAGCATAGATGGTACTTTTCACAAACCAAACAATTCAAATAACATTAATCATGTGCAAGAGAATATCAGCCAACAACAACTATATTACTCTTCCTTAAGAAACCATGATGTGATGTTAGAAGGGTGCATGAAAAATCAGGTAAAAGATAGTGTTCAGCTCCCAAAAATAGTTGAGGATGAAATTTTTGGTATGAGGAGTTGGGATTCAAAGACATGTGGGTTGTCAATGAGTCCTGGTTCACAATCAAGTTGTGTTACAAGTTCACAACAGACATCACTTGCTCCCATTGATTCTGTTTCCATTGAAATGGTAGACATGAAAAAGAATCAGAACCAAACCGTTTTAAGGAATACATTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATTTATGGGATAACAGCATTAAGAAAGAGGGACAAGCTAGGAAAGGAAAGCAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGTCCCTCCACTCGTATAAATTTCCCTTTGGAAAATTATGAAAAAGAACTTGAAGAAATGAAGAAAATGACAAGACAAGAATATGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTATAGAGGAGTAACAAGCAGACACCATCAACATGGAAGATGGCAAGCTCGAATAGGAAGAGTAGCAGGAAATAAAGATCTCTACCTTGGAACCTTCACTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGCAAATGCTGTTACAAATTTTGATATAAAAATATATGATGTGGACAAAATTATATCAAGCAGTAATCTTCTTAGCAGTGAACAAGCTAAGCGAAACAGAAATATGGATGATGCAATTAACAATAAACTTTCTACATTTGAAGACATTGAAGTAACAATTCCAATTCAGAAGAGATGCAAAATACAACAACATGACCAAAATCCACCTACACAAAGCTTTGAAAGTTGCACGGTCCAATCATTTTCATTAGCTTTAGATAACATATATCACTATCAAGAAATAGATGAATCAAATCCTTCTTCATTGGTTACAAGCTTGAGTAGCTCAAGAGAAGAAAGTCCAGACAGAACAAGCTTACCAATGCTCTTTGGAATGTCATCAACAGAATCAATGCCTTCATTTTCTTTGCCTCAGATTCCATTGTCTGTCTTTGCTGCTTGGAATGATGCATGA	1548	0.363	MNFNNLMNIGVLSHTTHQTQPSSASASASATEAFVPSFYHHPTPLHNYGYYYGLEGEHVGLYSALPIMPDGSIYGIEALCKSQAQEAMQVSIDGTFHKPNNSNNINHVQENISQQQLYYSSLRNHDVMLEGCMKNQVKDSVQLPKIVEDEIFGMRSWDSKTCGLSMSPGSQSSCVTSSQQTSLAPIDSVSIEMVDMKKNQNQTVLRNTFGQRTSQYRGVTRHRWTGRYEAHLWDNSIKKEGQARKGKQGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYEKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAAEAYDIAAIKFRGANAVTNFDIKIYDVDKIISSSNLLSSEQAKRNRNMDDAINNKLSTFEDIEVTIPIQKRCKIQQHDQNPPTQSFESCTVQSFSLALDNIYHYQEIDESNPSSLVTSLSSSREESPDRTSLPMLFGMSSTESMPSFSLPQIPLSVFAAWNDA	515

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car08g00405	515	Gene3D	AP2/ERF domain	214	280	IPR036955	GO:0003700\|GO:0006355
Car08g00405	515	Gene3D	AP2/ERF domain	314	376	IPR036955	GO:0003700\|GO:0006355
Car08g00405	515	SUPERFAMILY	DNA-binding domain	313	374	IPR016177	GO:0003677
Car08g00405	515	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	150	483	-	-
Car08g00405	515	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	28	88	-	-
Car08g00405	515	SUPERFAMILY	DNA-binding domain	214	280	IPR016177	GO:0003677
Car08g00405	515	Coils	Coil	279	299	-	-
Car08g00405	515	CDD	AP2	313	374	IPR001471	GO:0003700\|GO:0006355
Car08g00405	515	ProSiteProfiles	AP2/ERF domain profile.	215	278	IPR001471	GO:0003700\|GO:0006355
Car08g00405	515	Pfam	AP2 domain	215	270	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g00405	Car-Chr8	3351266	3354536	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g00405	47	419	AP2-EREBP Transcription Factor Family	AT4G37750	50.889	6.08e-127	380

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Car08g00405		AP2	1.8e-09	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g00405	K09285		-	gmx:100812275	554.673

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car08g00405	08	3351266	3354536	Car07g01358	07	12663018	12666755	PCT

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