Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00402 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAAAAAGGACCATGGTCTCCTGAAGAAGATTCCAAACTCAAGTCTTACATAGAACAGAAGGGTACTGGTGGAAATTGGATTGCTCTGCCACAGAAGATAGGACTTAAGAGATGTGGAAAAAGTTGTCGTCTTCGATGGTTAAATTATCTTCGACCGAATATTAAACATGGTGGTTTTTCAGAGGAAGAAGATGACATTATATGTAGTCTCTATATTAGTATCGGAAGCAGGTGGTCAATCATAGCAGCACAATTACCAGGACGAACGGATAATGATATAAAGAACTACTGGAACACAAGGTTGAAGAAAAAGCTCCTTGGAAAACAAAGGAAGGAACAACATgctcaagctcaagctcaagctcaagctcaagcGCGAAGAGTTagcaacatgaaacaagaaatgaaaagagaaacaaATCATAATTTGATGATATCTTCTTGTATGAGTACTCAAGCTCCTAATTATTGGACAGCTGCAGAGTATTCTGTTCATCATCCCATCCAAGTTTCAAATTCTTCCATCATGAACTATGATCATCTCAACAATGAAACATCTTTCACAAATTTGCTTCATCCAACAACCATAGTGGacatgaacatgaacatgaacatgaacatgaCAAACCCTTTGTCCATGGTGAGTGATACAAACAATGGTGGTAGTAATTGTGATCATCCACCACAAATATTTGAAGGGTTTGAAATTTTTTCAAGTGATTTAAGTGAGTTGGTTTGTGTGAACCAACAACAAATGGAGGCTTTTTATGGAATTGATCAATCCAATGGTGGTAGCACAATCACAACTTCAACAGAAAGCACTAGTTGGGGTGATATGAACTCTTTGGTTTATTCACCTAATTTGGTTTCTGATTATGAAGGTTCAATTCCACAAGATGTTGCTACTTTTGAGGATTCTAGGTATTTTAAAATGCAATAA 975 0.3364 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQKGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQHAQAQAQAQAQARRVSNMKQEMKRETNHNLMISSCMSTQAPNYWTAAEYSVHHPIQVSNSSIMNYDHLNNETSFTNLLHPTTIVDMNMNMNMNMTNPLSMVSDTNNGGSNCDHPPQIFEGFEIFSSDLSELVCVNQQQMEAFYGIDQSNGGSTITTSTESTSWGDMNSLVYSPNLVSDYEGSIPQDVATFEDSRYFKMQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00402 324 CDD SANT 71 113 IPR001005 -
Car08g00402 324 PANTHER OS09G0431300 PROTEIN 176 311 - -
Car08g00402 324 PANTHER OS09G0431300 PROTEIN 1 172 - -
Car08g00402 324 MobiDBLite consensus disorder prediction 119 142 - -
Car08g00402 324 CDD SANT 16 62 IPR001005 -
Car08g00402 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Car08g00402 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car08g00402 324 Coils Coil 126 150 - -
Car08g00402 324 Gene3D - 70 150 - -
Car08g00402 324 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Car08g00402 324 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Car08g00402 324 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Car08g00402 324 Gene3D - 7 68 - -
Car08g00402 324 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 176 311 - -
Car08g00402 324 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 172 - -
Car08g00402 324 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Car08g00402 324 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car08g00402 324 MobiDBLite consensus disorder prediction 125 141 - -
Car08g00402 324 SMART sant 67 115 IPR001005 -
Car08g00402 324 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00402 Car-Chr8 3292951 3294636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00402 1 297 MYB Transcription Factor Family AT3G49690 49.221 8.76e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g00402 Myb_DNA-binding 6.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00402 K09422 - gmx:100812816 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00402 08 3292951 3294636 Car07g01355 07 12609456 12610888 PCT