Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00400 ATGGGTGTTCAACAAGATTCCAATAACTCAGGCCTTCATCTTGTTCTAGGCTTATCATTGAATCCAAATGAAACAACCATCAACCACCACTCAATATCAATGAAAAACTATTCCTCCAACGAACCATCCTTAACTTTGGGACTTTCTAGTGAAAGTACTTATTGTACCAACAACCAAGCTCATAGTAACAGTGTTGTTTCTTCTTTCTCAAGTGGGAGAGTACTACAACAAGTGAAGAGGGAGAGAGATTTCAGCTATGAAGAGGTTGAAGAAGAGAGAGTTAATTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACTAATGCTAGAAAGAAACTTAGGCTTACCAAACAACAATCTTTACTTCTCGAAGAAAGTTTCAAACTACACAGCACACTCAATCCTAAACAAAAACAAGCTTTAGCGAGGCAATTGAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAACTGAAACAAACAGAGGTAGATTGCGAATTCTTGAAGAAATGTTGTGAAACATTAACAGACGAAAACAGGAGACTAAATAAAGAGCTACAAGAATTGAAGGCATTGAAACTAACAACACAATCCTTATACATGCCTATGTCTGCAGCCACCCTCTCCATGTGTCCCTCTTGCGAGAGGCTCGGCGAAGAGGGTGGTCCGAATAAGATCACTGCCTTCACCATGGCTCCTAATTCTCATTTCTACAATCATTTCAACAATCCCCCTGCAGCATGTTGA 768 0.4023 MGVQQDSNNSGLHLVLGLSLNPNETTINHHSISMKNYSSNEPSLTLGLSSESTYCTNNQAHSNSVVSSFSSGRVLQQVKRERDFSYEEVEEERVNSSRVSDEDEDATNARKKLRLTKQQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLNKELQELKALKLTTQSLYMPMSAATLSMCPSCERLGEEGGPNKITAFTMAPNSHFYNHFNNPPAAC 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00400 255 SMART halz 166 209 IPR003106 GO:0006355|GO:0043565
Car08g00400 255 PANTHER - 7 255 - -
Car08g00400 255 Pfam Homeobox associated leucine zipper 166 200 IPR003106 GO:0006355|GO:0043565
Car08g00400 255 CDD homeodomain 110 167 IPR001356 GO:0003677
Car08g00400 255 SMART HOX_1 108 170 IPR001356 GO:0003677
Car08g00400 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 255 - -
Car08g00400 255 MobiDBLite consensus disorder prediction 87 111 - -
Car08g00400 255 Pfam Homeodomain 110 164 IPR001356 GO:0003677
Car08g00400 255 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Car08g00400 255 Coils Coil 172 202 - -
Car08g00400 255 Gene3D - 103 171 - -
Car08g00400 255 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Car08g00400 255 SUPERFAMILY Homeodomain-like 103 167 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00400 Car-Chr8 3265215 3267181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00400 1 255 Homeobox Transcription Factor Family AT4G37790 56.643 1.85e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car08g00400 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00400 K09338 - gmx:100795135 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00400 08 3265215 3267181 Car07g01352 07 12571053 12572627 PCT