LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g00396	ATGGAAAAAGAAAAACTCATTCTTCCATTTTTACTACTATCTTTACTCATGTATTCAAATGGAACCACCTTTTCAATTTCAAGAGACTATGAAATTCTTCTGCAAGTGAAGAACACTCAAATCGATGATCAAAACAAGAGTCTCAAAGACTGGTTACCAAACACACAACACAATCCTTGTAACTGGACAGGCATAACCTGCGATTCACGAAACAAATCAGTTGTAACAATCGACCTCACCGAGTTCGGTATCTACGGCGATTTCCCCTCTGGTTTTTGTCACATTCCAACTCTCCAAAACCTTTCACTTGGAACCAATTTTCTCGGCAATGTTCTTTCCTCACATTCCATACTACCCTGTTCTAATCTTCGTTTCTTAAACCTCTCCGACAACTTATTCGTCGGAACGTTACCGGAGTTTCCATCAGAAATCTTTGAACTAAGAACACTTGACCTCTCATTGAACAACTTCACCGGCGACATTCCGGTGAGTTTCGGCCGGTTTCCACTACTGAAAGTTCTGATTTTGTCTGGTAACCTTTTCACCGGAGCAATTCCTCCGTTTTTAAGTAACCTCAGTGAGTTAACTCGGTTTGAACTAGCTTACACAGAAACAATGAAACCTTCACCTTTACCTTCTGAAATAGGAAACCTTACGAAGCTAGAATTTCTCTATTTATCCAAAATAAACCTCATAGGAAACATACCAGACACAATTTTCAGTCTTATTTCCATCAAAAACTTCGATTTGTCACAAAACTCTTTGTCTGGTAAAATCCCAGAAACCATTTCAAGCTTGAAAACCATACAAAAAATTGAACTATTTGATAACAATCTTTCCGGTGAAATTCCAAAAGGTTTAAAAAACCTCACAAGTTTGTTTCTCTTAGACCTCTCTCAGAACGCTCTCACCGGAAATTTTCCAGAACAAATCGCTTCAATGAATCTCTCTGTTCTCAACTTAAACGACAATTTTCTCAGCGGTGAAGTTCCACAAATTTTAGCTTCAAATCAAAATTTGCAGCATCTGAATCTTTACAACAACAGCTTCTCAGGAAAACTTCCACAAGATCTCGGAAAAAACTCTGCGTTAATAGAAATCGATGTTTCAACTAATAACTTCATTGGAGAGTTACCAAAGTTTCTATGCCAAAGAAAAACTCTTCAGCGACTCATCACATTCAGAAACCGATTTTCTGGTCCTCTGCATGATGAATATAGCGAATGTGATTCTCTCAAATACGTAAGAATTGAAAACAACGAACTCTCTGGTTCAGTTTCACCGAGTTTCTGGAACCTTCCAAATGTTTATTTTCTGAAAATGGAACACAAcaagtttcaaggttcaatctcaagttcaatttccaaAGCCAAAGGAATCACAAAACTGCTTTTAGCCGGTAACCGGTTTACCGGTCAGTTTCCGAATGAAGTCTGCGAACTTATTCGGCTAGTTGAAATTGACATCGGAAACAACCGGTTTACCGGTGAAGTTCCAACCTGCATAACCGGTTTGAAAAAGTTGCAGAAACTTAAAATGCAGGAAAACATGTTCATCGGCGAGATTCCCGGTAACGTAACATCATGGACCGAGTTAACGGAGTTAAACCTTTCGCATAACCGGTTCACCGGTTCAATTCCACGTGAACTTGGTAATTTACCTGACTTAATATACCTTGATCTCGCCGTTAATTATTTAACGGGAAAAATTCCGGTGGAGTTAACGAATTTAACGTTGAATCAATTCAACGTTTCTGATAACAAATTGTACGGTGAAGTTCCTTCGGGTTTTAACCATCAAGTTTATTTATCGGGTTTAATGGGTAACCCGGGTTTATGTAGCCCCGTTATGAAAACCCTTCCTCGTTGTTCAAATCACAAACCCTTTTCCATTGTTGCTATAATCGTTTTAACTTTTTCTGTTGTTCTACTTTTTGTGTGTATTTTGTGGTTTTTGAAGAGAAAGTCGGGTACTTTAGTTGGAAAATCGAAACGGGCTTTTATGACAACCGCGTTTCAGAGAGTTGGGTTCAATGAGGAAGATATTGTTCCTTTTTTAACAAACGAGAATTTGATTGGAAGAGGGAGTTCGGGTCAGGTTTATAAGGTGAAAGTGAAAACGGGTCAGATAGTTGCGGTAAAAAAGCTTTGGGGTGGTGGTAAAAATAAACAAGATACTGAATCAGCATTTAAATCAGAGATTGAAACATTGGGTAGAATTAGACATGCTAATATAGTGAAACTGTTGTTTTGTTGTAGTGGTGATGATTTTAGAATATTGGTTTATGAGTATATGGAGAATGGTAGTTTGGGTGATGTATTGCATGAGGAGAAGTTTGGAGGGGTGTTAATGGATTGGTCTAAGAGATTTGGAATTGCTTTGGGTGCTTCTCAAGGGTTGGCTTATTTACACCATGATTGTGTTCCTGCTATTGTTCATAGGGATGTAAAGAGTAATAACATATTACTTGATCATGATTTTGTGCCTTGTCTGGCTGATTTTGGAATTGCTAAGACATTGATGCGTGAGGGAACTGAATGTGCTATGTCTAGAGTTGCCGGATCATATGGCTACATAGCTCCAGAGTATGCTTATACATTGAAAGTGACTGAGAAGAGTGATGTGTATAGTTTTGGTGTTGTGCTGATGGAATTGATCACTGGGAAGAGGCCAAATGACTCTAGTTTTGGTGAGAACAAAGATATTGTGAAGTGGGTCACTGAGACTGCTTTATCATCATCTCATGGAGATTGTATTACTTGGACCAAGATTGTGGACCCAAGATTGAACTTAGATACTTGTCATTATGAAGATGTTGAGAAGGTGTTGAATGTGGCTCTACTTTGCACCTCAGCATTTCCAATTAGTAGACCTTCAATGAGAAGGGTGGTTGAATTGCTCAAAGACCATAAATTGGCTCGACCCAAGTCATGA	2934	0.3814	MEKEKLILPFLLLSLLMYSNGTTFSISRDYEILLQVKNTQIDDQNKSLKDWLPNTQHNPCNWTGITCDSRNKSVVTIDLTEFGIYGDFPSGFCHIPTLQNLSLGTNFLGNVLSSHSILPCSNLRFLNLSDNLFVGTLPEFPSEIFELRTLDLSLNNFTGDIPVSFGRFPLLKVLILSGNLFTGAIPPFLSNLSELTRFELAYTETMKPSPLPSEIGNLTKLEFLYLSKINLIGNIPDTIFSLISIKNFDLSQNSLSGKIPETISSLKTIQKIELFDNNLSGEIPKGLKNLTSLFLLDLSQNALTGNFPEQIASMNLSVLNLNDNFLSGEVPQILASNQNLQHLNLYNNSFSGKLPQDLGKNSALIEIDVSTNNFIGELPKFLCQRKTLQRLITFRNRFSGPLHDEYSECDSLKYVRIENNELSGSVSPSFWNLPNVYFLKMEHNKFQGSISSSISKAKGITKLLLAGNRFTGQFPNEVCELIRLVEIDIGNNRFTGEVPTCITGLKKLQKLKMQENMFIGEIPGNVTSWTELTELNLSHNRFTGSIPRELGNLPDLIYLDLAVNYLTGKIPVELTNLTLNQFNVSDNKLYGEVPSGFNHQVYLSGLMGNPGLCSPVMKTLPRCSNHKPFSIVAIIVLTFSVVLLFVCILWFLKRKSGTLVGKSKRAFMTTAFQRVGFNEEDIVPFLTNENLIGRGSSGQVYKVKVKTGQIVAVKKLWGGGKNKQDTESAFKSEIETLGRIRHANIVKLLFCCSGDDFRILVYEYMENGSLGDVLHEEKFGGVLMDWSKRFGIALGASQGLAYLHHDCVPAIVHRDVKSNNILLDHDFVPCLADFGIAKTLMREGTECAMSRVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDSSFGENKDIVKWVTETALSSSHGDCITWTKIVDPRLNLDTCHYEDVEKVLNVALLCTSAFPISRPSMRRVVELLKDHKLARPKS	977

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g00396	977	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	811	823	IPR008271	GO:0004672\|GO:0006468
	Car08g00396	977	Gene3D	Transferase(Phosphotransferase) domain 1	765	975	-	-
	Car08g00396	977	Pfam	Leucine rich repeat N-terminal domain	28	68	IPR013210	-
	Car08g00396	977	SUPERFAMILY	RNI-like	77	422	-	-
	Car08g00396	977	Gene3D	Phosphorylase Kinase; domain 1	677	764	-	-
	Car08g00396	977	Pfam	Leucine Rich Repeat	339	359	IPR001611	GO:0005515
	Car08g00396	977	Pfam	Leucine Rich Repeat	532	553	IPR001611	GO:0005515
	Car08g00396	977	Gene3D	Ribonuclease Inhibitor	25	208	IPR032675	-
	Car08g00396	977	Pfam	Protein kinase domain	688	899	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00396	977	SUPERFAMILY	Protein kinase-like (PK-like)	686	967	IPR011009	-
	Car08g00396	977	SMART	serkin_6	686	973	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00396	977	SUPERFAMILY	L domain-like	315	623	-	-
	Car08g00396	977	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	11	972	-	-
	Car08g00396	977	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2	11	972	-	-
	Car08g00396	977	Gene3D	Ribonuclease Inhibitor	315	626	IPR032675	-
	Car08g00396	977	ProSitePatterns	Protein kinases ATP-binding region signature.	692	715	IPR017441	GO:0005524
	Car08g00396	977	Gene3D	Ribonuclease Inhibitor	209	314	IPR032675	-
	Car08g00396	977	ProSiteProfiles	Protein kinase domain profile.	686	973	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g00396	977	ProSiteProfiles	Leucine-rich repeat profile.	531	554	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g00396	Car-Chr8	3228470	3232630	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g00396	29	971	Receptor kinase-like Gene Family	AT5G65710	53.498	0.0	1009

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Car08g00396		Pkinase	7.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g00396	-		-	mtr:MTR_5g014720	1549.64