Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00392 ATGCGTttcgttcttcttcttcttcttttctttcgcttctttttccactacgttcattctGCACCCATCTCAGAATACCGTGCTCTTCTTTCTCTTCGCGAAGCAATTACCGATACTAACCCTCCCATTCTCTCTTCATGGAACCCCTCAACCACTCACTGTATCTGGTTAGGTGTAACATGCGACACACGCCGCCACGTCACCGCTCTTAACCTCACCGGACTTAATCTCTCCGGCACACTTGCCGCCGATATCGCTCACCTCCCATTTCTCTCGAATCTCTCCCTCGCCGACAATAAATTCTCCGGTGAAATCCCTCCGTCGCTATCCGCCGTCTCCGGCCTTCGTCTATTAAACCTCTCCAACAATGTCTTCAACGGCACTTTCCCTTCCGAGCTTTCTCAACTTAAGAGCCTCGAAGTTCTCGACCTATACAACAACAACATGACCGGAACGCTTCCTCTCGCCGTCACAGAGCTTCCGAATCTTCGTCATTTGCATCTCGGAGGCAACTACTTCACCGGCCAGATCCCGCCAGAGTATGGACTATGGCAACACTTGGAGTACCTTGCTGTTTCCGGTAATGAACTCGACGGAACCATCCCGCCGGGAATCGGAAACTTAACCAGTCTCCGGGAGCTTTACATCGGATACTACAATACCTACGCCGGCGGCATTCCGCCGGAGATTGGAAACTTAACTGAACTTGTCCGTCTCGATGCCGCTTACTGCGGATTATCTGGCGAGATTCCGGCGGAGATGGGAAAACTTCAAAAACTTGACACACTGTTTCTTCAAGTGAATGCACTTTCAGGTTCTTTAACATGGGAGCTTGGAAACTTGAAGAGTCTCAAATCAATGGATTTGTCTAACAACATGTTAACCGGTGAGATTCCGACGAGTTTCAGTCAATTGAAAAACCTCACGCTTCTTAACCTCTTCAGGAACAAACTTCACGGAGCCATTCCGGAGTTCATCGGAGATATGCCGGCGTTGGAAGTTGTGCAGTTATGGGAAAACAACTTCACCGGGAACATTCCGATGGGTTTGGGAAGTAACGGAAAACTCACTCTTTTAGACCTTTCATCAAACAAGTTAACTGGTACACTTCCACCTTATTTGTGTTCTGGAAATCGTCTTCAAACTTTGATAACTCTTGGTAATTTTCTGTTTGGTCCAATTCCTGAATCTCTTGGAAGTTGCGAATCATTGAATCGAATTCGTATGGGTGATAATTTTCTGAATGGTTCAATTCCTAAAGGTCTTTTTGGACTTCCAAAACTCACTCAAGTTGAGCTTCAAGATAATTATCTCTCTGGAAATTTTCCTGAGACTCATTCAGTTTCTGTTAATCTTGGTCAGATTACTCTTTCCAACAATCAACTTTCTGGAGTTTTACCTCCTTCTATAGGTAACTTCACCAGCATGCAGAAGTTTCTTCTTGATGGAAACATGTTCACAGGAAAGATTCCATCTCAGATTGGAAGGTTGCAACAGCTTTCAAATATTGATTTTAGTCACAACAAGTTTTCAGGTCCTATTGCATCTGAGATCAGTCAATGCAAGCTCTTAACTTTTGTTGATCTTAGTCGTAATGAGTTATCTGGGGTTATCCCAAATGAGATTACTGGTATGAGGATATTGAATTACTTGAATCTTTCTAGAAATCATCTAGTTGGTAGTATTCCTATTTCTATATCCTCAATGCAAAGCTTAACCTCTGTTGATTTTTCATATAATAATCTATCTGGTTTGGTTCCTGGTACTGGTCAATTTAGCTACTTTAACTACACGTCTTTCTTAGGAAACCCTGATCTTTGTGGCCCTTATTTGGGTTCTTGTAAAGATGGGGTTGCCAATGGTGCTAACCAACCTCATCATGTTAAGGGTCTTTCTTCTTCCTTGAAGCTACTACTTGTTATTGGGTTGCTTGCATGCTCCATTGTATTTGCTATTGCTGCAATATTCAAGGCTAGGTCTTTGAAGAAGGCTAGCGAGGCTCGTGCGTGGAAATTGACTACTTTTCAACGTTTGGACTTCACTGTTGATGATGTTTTGGATTGCTTGAAGGAGGATAACATCATAGGAAAAGGAGGTGCTGGCATTGTTTACAAAGGTGCAATGCCGAACGGGGAACTTGTTGCTGTTAAGAGGCTTCCTGTTATGAGTAGAGGCTCTTCTCATGATCATGGATTCAATGCTGAGATTCAGACATTGGGGAGAATCAGACATAGGCACATTGTTAGGTTGTTGGGTTTCTGTTCAAATCATGAGACTAATCTTTTGGTTTATGAATACATGCCTAATGGAAGTTTGGGTGAAGTTCTTCATGGAAAGAAAGGGGGTCATTTATATTGGGATACTaggtataaaattgctgtggaggctgcgaagggactttgctatttacaccatgattgttccccgcttattgttcaccgagatgtgaaatcaaacaacatccttctcgattctagttatgaagcacatgttgctgattttggacttgccaagttcctgcaagattctggaacatCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCTTATACATTGAAAGTCGATGAGAAAAGTGATGTGTACAGCTTTGGTGTTGTTCTTCTAGAGCTTATAACTGGAAGGAAACCAGTAGGAGAATTCGGCGATGGTGTGGACATTGTGCAATGGGTGAGAAAAATGACAGActccaacaaagaaggagttctaaaagttcttgatcctagactttcctcagttcctcttcATGAAGTCACACATGTTTTCTACGTAGCAATTCTGTGTGTTGAAGAACAGGCAGTAGAAAGGCCGACTATGCGCGAAGTTGTTCAAATTCTGACAGAGCTTCCAATGCCTCCTGAGTCTAAACAAGGGGACTCAACAATTACAGAATCATCTTTGTCAAATGCTTCAGAGTCTCTAACTGCAGCCTCTAAAGATAATCAACATCCTCCTCCATCACCGCCTCCCGATCTCTTAAGCATTTGA 3030 0.3911 MRFVLLLLLFFRFFFHYVHSAPISEYRALLSLREAITDTNPPILSSWNPSTTHCIWLGVTCDTRRHVTALNLTGLNLSGTLAADIAHLPFLSNLSLADNKFSGEIPPSLSAVSGLRLLNLSNNVFNGTFPSELSQLKSLEVLDLYNNNMTGTLPLAVTELPNLRHLHLGGNYFTGQIPPEYGLWQHLEYLAVSGNELDGTIPPGIGNLTSLRELYIGYYNTYAGGIPPEIGNLTELVRLDAAYCGLSGEIPAEMGKLQKLDTLFLQVNALSGSLTWELGNLKSLKSMDLSNNMLTGEIPTSFSQLKNLTLLNLFRNKLHGAIPEFIGDMPALEVVQLWENNFTGNIPMGLGSNGKLTLLDLSSNKLTGTLPPYLCSGNRLQTLITLGNFLFGPIPESLGSCESLNRIRMGDNFLNGSIPKGLFGLPKLTQVELQDNYLSGNFPETHSVSVNLGQITLSNNQLSGVLPPSIGNFTSMQKFLLDGNMFTGKIPSQIGRLQQLSNIDFSHNKFSGPIASEISQCKLLTFVDLSRNELSGVIPNEITGMRILNYLNLSRNHLVGSIPISISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGSCKDGVANGANQPHHVKGLSSSLKLLLVIGLLACSIVFAIAAIFKARSLKKASEARAWKLTTFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPNGELVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLYWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSSYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLSSVPLHEVTHVFYVAILCVEEQAVERPTMREVVQILTELPMPPESKQGDSTITESSLSNASESLTAASKDNQHPPPSPPPDLLSI 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00392 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Car08g00392 1009 Gene3D Transferase(Phosphotransferase) domain 1 767 982 - -
Car08g00392 1009 Gene3D Phosphorylase Kinase; domain 1 655 766 - -
Car08g00392 1009 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 999 - -
Car08g00392 1009 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00392 1009 SUPERFAMILY Protein kinase-like (PK-like) 682 961 IPR011009 -
Car08g00392 1009 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Car08g00392 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 999 - -
Car08g00392 1009 SUPERFAMILY RNI-like 70 391 - -
Car08g00392 1009 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Car08g00392 1009 SMART serkin_6 689 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00392 1009 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00392 1009 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Car08g00392 1009 Gene3D Ribonuclease Inhibitor 178 275 IPR032675 -
Car08g00392 1009 SUPERFAMILY L domain-like 354 611 - -
Car08g00392 1009 MobiDBLite consensus disorder prediction 964 1009 - -
Car08g00392 1009 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515
Car08g00392 1009 MobiDBLite consensus disorder prediction 968 995 - -
Car08g00392 1009 SMART LRR_typ_2 354 377 IPR003591 -
Car08g00392 1009 SMART LRR_typ_2 136 159 IPR003591 -
Car08g00392 1009 SMART LRR_typ_2 160 186 IPR003591 -
Car08g00392 1009 SMART LRR_typ_2 88 112 IPR003591 -
Car08g00392 1009 SMART LRR_typ_2 569 592 IPR003591 -
Car08g00392 1009 SMART LRR_typ_2 305 329 IPR003591 -
Car08g00392 1009 SMART LRR_typ_2 281 304 IPR003591 -
Car08g00392 1009 Gene3D Ribonuclease Inhibitor 353 618 IPR032675 -
Car08g00392 1009 Gene3D Ribonuclease Inhibitor 276 352 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00392 Car-Chr8 3203966 3207516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00392 17 999 Receptor kinase-like Gene Family AT5G65700 80.081 0.0 1584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car08g00392 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00392 - - ccaj:109800149 1737.62