Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00390 ATGGAGGATCTTACCTTCTTTCACCAATACCCTATAGATTCTCTTGCATATCCATTTGATAATTTCCACTCTTTATACGAGAGTGATTCCTCTAATGATAATAACTATTTCAACTATGATAAAACAACACCAAATTGTTTCCCACTTGAAAATCTTGATCTTCCAAGACCAACTAAGAAGATCAAAACATCTAACTCTTGTTCCTATTCATCACCTCAACTAATTTCTTTTGAACCCCTCAATGCACCACAACAATTTTACAACTTGGATTATTCCGATCTAAAGCCTAAAATAGAGAAAATTACAGGTTTGGTTTCTCAAGGTTCATATGAAGAAAAAATATTATCAAATTATGATAACCGAGCGAATCAGACCATGAGAAACTCAACTCAAGCTCAAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAACTTACCCGAAGTTTCATTGCTCTTTCGGCCCTCGTTCCTGGCCTCAAGAAGGTATTAATTAATTCTTACACATACTCaattaaaattataatattatttgaaaaaaataaaaataaaaataaaaaTGATAAATGGCATGTGCAGATGGATAAGGCTTCGGTGTTGGGAGATGCAATAAAGTATGTGAAACAACTAAAAGAGCGTTTGCAGAGTCTAGAAGAGCAAGGAACAAAGAAAAAAGCGATTATAGTGAAGAGATCTTTTATTTTACCTGATGATAATAATGATATTGAGTCATCAAAGTCCAACCAAACACTCCCTGAAATCGAAGTAAGAGTTTCCGCTAAAGACGTACTCATCAAGATTCAATGCGACAAAGAGAATGGACTTGCGTCTACTCTACTTGGACATTTACAAAATCATAATCTCACTCTCCAAACTACTACCTTTTTGCCCTTTGGAAACAACATTCTTGACATAACTATTCTTGCTCAGATGAACAAGGAAAACTGCGTCACCGCAAAGGATCTCATAGGAAGTTTAAGGAAGGCTTTGCTCGTCCATAATTAA 1005 0.3473 MEDLTFFHQYPIDSLAYPFDNFHSLYESDSSNDNNYFNYDKTTPNCFPLENLDLPRPTKKIKTSNSCSYSSPQLISFEPLNAPQQFYNLDYSDLKPKIEKITGLVSQGSYEEKILSNYDNRANQTMRNSTQAQEHVMAERKRREKLTRSFIALSALVPGLKKVLINSYTYSIKIIILFEKNKNKNKNDKWHVQMDKASVLGDAIKYVKQLKERLQSLEEQGTKKKAIIVKRSFILPDDNNDIESSKSNQTLPEIEVRVSAKDVLIKIQCDKENGLASTLLGHLQNHNLTLQTTTFLPFGNNILDITILAQMNKENCVTAKDLIGSLRKALLVHN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00390 334 PANTHER BHLH TRANSCRIPTION FACTOR 193 333 - -
Car08g00390 334 SMART finulus 136 216 IPR011598 GO:0046983
Car08g00390 334 Pfam Helix-loop-helix DNA-binding domain 133 211 IPR011598 GO:0046983
Car08g00390 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 210 IPR011598 GO:0046983
Car08g00390 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 221 IPR036638 GO:0046983
Car08g00390 334 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 193 333 - -
Car08g00390 334 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 163 - -
Car08g00390 334 PANTHER BHLH TRANSCRIPTION FACTOR 2 163 - -
Car08g00390 334 Gene3D - 120 225 IPR036638 GO:0046983
Car08g00390 334 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00390 Car-Chr8 3169663 3171279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00390 121 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.743 9.18e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00390 HLH 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00390 - - cam:101507557 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00390 08 3169663 3171279 Car08g00390 08 3169663 3171279 ECH
Car08g00390 08 3169663 3171279 Car07g01345 07 12461532 12465260 PCT