Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00389 ATGTTTTCTCAGGAACCAGAAGATTACAACTTCGTTAATGAATCAAATACAAACAAGGTACATGAAAGTTTCCATTTTCATCATGAAATTGACATAATAACCCCTTTGCCACAAGATCATAATAGTGATAGTCATTACTCAAGCACTATGAGTAACTCCTCAGGGGATGCTAACAGCTTTGAGAGGCCTTCCAAAACACTTAAGACTAACCCTTCAAATACAGGGTACCCTTCCTCACAAAAAAAAGATTCTTCCTTCCCTTACATTCTTTCATTTAACAATGAAAATCCAGAACCAGAGCCAATATTGAACATTGATTCTTCTTCTACCTTGAAACCGAAAGCCAAAAGTTTAAATCATGGAAAGTCTTTAACCTCAAACAAAGGGTCCTTAGAAAATCAAAAAAAGGAAACTAAACGGAAGAAGAATGATTCATTTACAAGATCTTCTCAACATAATCAAGATCACGTACTTGCTGAGAGAAAAAGGAGAGAGAAACTTAGCCAACAGTTCATAGCACTTTCAGCACTCATTCCAGGATTAAAAAAGATGGATAAGGCTTCTGTATTGAGTGATGCTGTAAACCATGTGAAACAGCTTCAAGAACAAGTAAAAGTACTTGAAGAAAAGAACACAAGGTTTAAAAACGTTGAATCTGTGGTTTATGTTGAGAAGAACAAGAACAAGAAGAGTTATTCACATGAAGATGTCTCAGACACTTCGTCAAATTCTGGATATGGTAATTGCTACCACGAATCAGAAACAATGCCCGAAGTTGAGGCAAGGGTGTCAGAAAAGAACGTTCTTATCAGAATTCATTGTGAGAAAAAAAAGGAAGTGTTGGTGAAGATAATGAAAGAGATAGAGAATCTTCATCTATCGGTCACTAGTAGTAGCACACTGCAATTTGGAAACACCAATCTAGACATAACCGTCATAGCCCAGATGGATGAGGAGTTCAGCCTAAGTGTGCAGGAACTAGCTAGGAACCTTCGAGTTGGATTGTTGAAATTCATGGAGTTGTAG 1026 0.3704 MFSQEPEDYNFVNESNTNKVHESFHFHHEIDIITPLPQDHNSDSHYSSTMSNSSGDANSFERPSKTLKTNPSNTGYPSSQKKDSSFPYILSFNNENPEPEPILNIDSSSTLKPKAKSLNHGKSLTSNKGSLENQKKETKRKKNDSFTRSSQHNQDHVLAERKRREKLSQQFIALSALIPGLKKMDKASVLSDAVNHVKQLQEQVKVLEEKNTRFKNVESVVYVEKNKNKKSYSHEDVSDTSSNSGYGNCYHESETMPEVEARVSEKNVLIRIHCEKKKEVLVKIMKEIENLHLSVTSSSTLQFGNTNLDITVIAQMDEEFSLSVQELARNLRVGLLKFMEL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00389 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 215 IPR036638 GO:0046983
Car08g00389 341 MobiDBLite consensus disorder prediction 132 160 - -
Car08g00389 341 MobiDBLite consensus disorder prediction 35 160 - -
Car08g00389 341 MobiDBLite consensus disorder prediction 37 131 - -
Car08g00389 341 Gene3D - 148 224 IPR036638 GO:0046983
Car08g00389 341 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Car08g00389 341 PANTHER BHLH TRANSCRIPTION FACTOR 5 336 - -
Car08g00389 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Car08g00389 341 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 336 - -
Car08g00389 341 SMART finulus 157 206 IPR011598 GO:0046983
Car08g00389 341 Coils Coil 190 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00389 Car-Chr8 3156650 3158312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00389 132 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.948 3.15e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00389 HLH 5.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00389 - - cam:101506050 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00389 08 3156650 3158312 Car08g00389 08 3156650 3158312 ECH