Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00388 ATGGAAGAAATAGATGATTGTAACTTGTTTCAACAATGCCAACCAAACTTGTTCGATGATGAAGATTTTATTTCACATGACATAGCAAGTGTTCTacaccaagaagaaaacttgcaacaacaacaacaacCTTTGTCTTCAGAAAGCTATTCTTCTTATAATTTGGAAAGACCCAACAAAAAGTTAAAAACGAAAAACACTTTACAAGATCTTTCCCCTGTTTCTTCCCCTTCTTCGACCACTTCCCAAATTATGTCCTTTGAGAAATCGAAATCATTTTCCTCTATCAATGAGGTTGTTATGTTTCAAACTCAAAAAGGGTCATTGCAAAAGAATAACTTTGTTGAAACTATGAATTCTCAAGGACAAGGAACCAAGAGATCTATGGCTAATAATCAGGAACATATCATTGCGGAGAGAAAGCGAAGAGAGAAACTTAGTCAGAGCTTAATTGCTCTAGCAGCTCTTATTCCTGGCTTGAAGAAGATGGACAAGGCTTCTGTTCTAGGAGATGCTATAAAGTATGTGAAAGAGCTTCAAGAACGTTTGAAGGTATTAGAGGAAAAGAAGAAGGATAGTCCTATAGAGTCTGTAGTAACGGTAAACAAACCGCCGTTAAGTTGCGAGTCATCGAGCGAAGAGGTTGCTAGTGGTAATAATGAACATCTACCCCACGTGGAAGTTAGAGTTTCGGACAAGGACGTGCTTATTCGTATTCATTGTCACAAACAAATGGGTCTTTTGCTCAAAATTTTGGTTGAGATTCAAAATCTTCATCTCTTTGTTGTTAATAGTAGTGTCCTACCTTTTGGGGATTCTATCCTTGACATAACCATCGTTGCTCAGAAGGGAACGGGATACAAGTTGAGCAGAAATGATCTTGTAAAAAACATACGCGTGGCTGCATTGAGATCCATGTCGTAA 924 0.3647 MEEIDDCNLFQQCQPNLFDDEDFISHDIASVLHQEENLQQQQQPLSSESYSSYNLERPNKKLKTKNTLQDLSPVSSPSSTTSQIMSFEKSKSFSSINEVVMFQTQKGSLQKNNFVETMNSQGQGTKRSMANNQEHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQERLKVLEEKKKDSPIESVVTVNKPPLSCESSSEEVASGNNEHLPHVEVRVSDKDVLIRIHCHKQMGLLLKILVEIQNLHLFVVNSSVLPFGDSILDITIVAQKGTGYKLSRNDLVKNIRVAALRSMS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00388 307 Coils Coil 169 196 - -
Car08g00388 307 MobiDBLite consensus disorder prediction 62 83 - -
Car08g00388 307 MobiDBLite consensus disorder prediction 65 83 - -
Car08g00388 307 Gene3D - 121 193 IPR036638 GO:0046983
Car08g00388 307 PANTHER TRANSCRIPTION FACTOR NAI1 19 303 - -
Car08g00388 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Car08g00388 307 PANTHER BHLH TRANSCRIPTION FACTOR 19 303 - -
Car08g00388 307 SMART finulus 136 185 IPR011598 GO:0046983
Car08g00388 307 Pfam Helix-loop-helix DNA-binding domain 133 180 IPR011598 GO:0046983
Car08g00388 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 192 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00388 Car-Chr8 3150594 3153128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00388 71 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.223 4.89e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00388 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00388 - - mtr:MTR_5g014560 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00388 08 3150594 3153128 Car08g00388 08 3150594 3153128 ECH
Car08g00388 08 3150594 3153128 Car07g01344 07 12454646 12458578 PCT