Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00382 ATGGCTGCAGATATTGGGTTTGTTTCCATGACTCAGATCCAAAATTCATCAAAATCACAATCCCAaaaacaccacaaaaacaaaacaaaacaaaacCCTAACTCCACCACCGCCTCATCAACTTGGATGTGGAACCCTAaagaagaacaagaacatgaagaagaagatgatgaTTCATGGGAGGTAAGAGCTTTTGCTGAAGACACAAGGAACATCATGAACACTACATGGCCACCAAGGTCTTACACTTGTACTTTTTGTAGAAGAGAGTTCCGGTCAGCTCAAGCCCTCGGCGGTCACATGAACGTCCACCGCCGTGACCGTGCTCGTCTccaccaaaaccaccaccaccacccaccTTCTCTTCCTTCTTCACCTTTCATAAATATCCCACCTCAAAACCTTGTTGCAAATGGTGGATTGTGTTTTCTTTACCATTTACCAAACCCtaataataatagtaataatGGTGAATCTCCTTCTACTCTTCTTTCTATATCTTCTTCATCTTATCCACCAAACAATTTGATGATGCAAATGCAAACTCTCTCTCCATCTTACTCTACCAAAGTGGaacaacaacaacaacaacaTGGTTCTTCCACCTCCATTGATGATAATAATGGTCATGATGAAATTGAAGAGCTTGATCTTGAGCTCCGCTTGGGGCATAAGCCAGCATAG 684 0.3553 MAADIGFVSMTQIQNSSKSQSQKHHKNKTKQNPNSTTASSTWMWNPKEEQEHEEEDDDSWEVRAFAEDTRNIMNTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQNHHHHPPSLPSSPFINIPPQNLVANGGLCFLYHLPNPNNNSNNGESPSTLLSISSSSYPPNNLMMQMQTLSPSYSTKVEQQQQQHGSSTSIDDNNGHDEIEELDLELRLGHKPA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00382 227 Pfam C2H2-type zinc finger 82 106 - -
Car08g00382 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Car08g00382 227 MobiDBLite consensus disorder prediction 153 204 - -
Car08g00382 227 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 43 223 - -
Car08g00382 227 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Car08g00382 227 MobiDBLite consensus disorder prediction 153 227 - -
Car08g00382 227 SMART c2h2final6 82 104 IPR013087 -
Car08g00382 227 Gene3D Classic Zinc Finger 72 122 - -
Car08g00382 227 MobiDBLite consensus disorder prediction 205 227 - -
Car08g00382 227 MobiDBLite consensus disorder prediction 31 45 - -
Car08g00382 227 MobiDBLite consensus disorder prediction 1 59 - -
Car08g00382 227 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
Car08g00382 227 PANTHER OS07G0101800 PROTEIN 43 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00382 Car-Chr8 3104154 3104911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00382 39 226 C2H2 Transcription Factor Family AT4G17810 42.157 2.30e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car08g00382 zf-C2H2_6 4.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00382 - - gmx:100818142 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00382 08 3104154 3104911 Car08g00382 08 3104154 3104911 ECH