Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00376 ATGGGAGGGGCTTCACTGCCTCCTGGTTTTCGTTTTCACCCAACTGATGAAGAATTGATAGGATATTACCTTAAAAGAAaagttgaaggacttgaaattgaacttgaagttATTCCTGTCATTGATTTCTACAAATTTGATCCTTGGGAGTTACCTGAGAAATCTTTCTTACCAAAAAGAGATATGGAATGGTTTTTCTTCTGTCCACGGGATCGAAAGTACCCAAATGGATCAAGGACAAATAGAGCCACCAAAGCTGGCTACTGGAAAGCCACAGGAAAAGACAGGAAGGTTGTGTGTGAGTCTAGTCCATTCATTTCCATTGAGACCGTGACAGGTTACCGCAAGACCCTGGTGTTCTACTGTGGAAGGGCGCCTTTAGGCGATCGAACCAACTGGGTCATGCATGAATATCGCCTCTGCGACGATCCTAGCCAAGGCTCAGAGGGTGCTTATGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAATCCAATGATTCCCAAGGGCAAGGAAGAAAGAAGGCTAAAGCTAATGATGGGAGCAATTCCATTTCCACCAATGGGAATGAGGTTTCTTCTCAAGCAAGTCAACTGTGCAGTGGGAGTGAGAGTCTTTATTCAAGTCCTATTGATTTCTCAGGCAATGTGCCTCTTATGGCTGGATTTGAGCAAGCTTCCTCTGATACCAATCCTTCAAGCTTCTGGCTCTCCCCTGACATGATTCTTGATTCTTCAAAGGACTACTCTCAAGTGCAAGTGCAAGATGTTGTTGGATCTTTTCCACAACAACATGACTTATTGAGTGCAATGACACCATGGCAATCATTTGAAAATACTGAAATTTCACCTAGCTCATCCTACTCAAATTTTAATGCAGAAATTGAATTTTCTGACGCTCTTAGTCGAATCGGCTGCATATCACCTTACTCAGGACAAGGAAGCTTCATGGACTTGCCTTATGAATGCTATGATCAAATTCATTCATTTGGGGACCCAAAGAAATTCTAA 1008 0.4137 MGGASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCESSPFISIETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLCDDPSQGSEGAYALCRVIKKNEKSNDSQGQGRKKAKANDGSNSISTNGNEVSSQASQLCSGSESLYSSPIDFSGNVPLMAGFEQASSDTNPSSFWLSPDMILDSSKDYSQVQVQDVVGSFPQQHDLLSAMTPWQSFENTEISPSSSYSNFNAEIEFSDALSRIGCISPYSGQGSFMDLPYECYDQIHSFGDPKKF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00376 335 Gene3D NAC domain 15 166 IPR036093 GO:0003677|GO:0006355
Car08g00376 335 MobiDBLite consensus disorder prediction 163 193 - -
Car08g00376 335 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 335 - -
Car08g00376 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 335 - -
Car08g00376 335 MobiDBLite consensus disorder prediction 174 193 - -
Car08g00376 335 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Car08g00376 335 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Car08g00376 335 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00376 Car-Chr8 3057892 3060432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00376 1 295 NAC Transcription Factor Family AT4G17980 55.333 7.54e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car08g00376 NAM 5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00376 - - adu:107487585 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00376 08 3057892 3060432 Car08g00376 08 3057892 3060432 ECH