Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00365 ATGGTTTGCACTGCCAATGATTTACAGGGATGGAAAGATTTCCCAAAAGGACTTAGGGTTCTTCTCCTTGAAGGAGACACCAATTCTGCTTCTGAAATAGCAGCAAAGCTTGAAGCCATGGACTATATTGTTTCTACCTTCTGCAATGAGAATGAAGCCTTGTCAGCTATCTCCAGTAGTCCCAAAGGCTTCCATGTTGCTGTAGTGGAGGTGAGTACAAGCTGCCCCGATGGGGGTTTCAAATTTCTCGAGAATGCAAAGGACTTGCCAACCATTATGACTTCGAACAGTCAGTGCCTGAACACGACGATGAAGTGCATAGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCCGAGGACAAGCTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCCGAGGCAAGTGCTCTGTCGGAATCACTAAAACCTGTAAAAGAATCTGTAGAGTCCATGTTGCAGCTCCGAACAAACAACAAACTACATGAAAATATAATATCAATAGATTTAGAGAAGGTGTCCAAGTTTAGTGATAATGAACATGAGCAATCTCCGGCGAGTGATAAATATCCCGCTCCTTCGACCCCACAGTTAAAACAAGGAGCAAGGTTAGTGGATGATGGGGATTGCCATGAGCAGACTACTAATTGCTCAATAGAAAAAGAAAGTGTGGAACATGATGGCGAATGTAAATCTGTTGAAACTTCATGTGAAAATTTAAATGTGGAAAGTTCTCCTCAATCAAGGAAACTTGAGGAGACTCTGACTAAGGAGGAAGAGGGTTTTGCTAATGATTCCAAGGGTGTTTCACTGAATCCACAAAATAAAAAGTTTGGCAATACGTCTTCAATTAAATCAGGTGCTCTTAACGATTCATGTGAGAATAAAGCTACTCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAGTTTGTGAAGGCGGTGGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTTGACGGCTTGACAAGGCATAATGTAGCTAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATGATGCATGGGGAGGAAGATCGAAAATGGCCAAATCAAAGAGATCAAATACATAGGAACTATAGTTTGCAAAGACCAATTATGGCGTATCCACCATATCATCATTCTAATCACACCCTTCCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGAAGTCAAACAACTGGTGTACAGATTTGGAGTCCTCCTCCTGGTTATCCGCTATGGCAGTCTACCGAAAGTTGGCATTGGAAGCCTTATCCACCGGGGGTGCATGTGGATGCATGGGGTTCCCCAATGTTACCACCTCCACAACCTCCTTATTCTCCCTACACTCAAAGTATAACCGGGTTGCACAATGCTAAAGCAGCGGATTATAGATTTGGCATGCCGCGAAGTTCCTTTGAGCATCATCCAGCAGAGGAGGTGGTGGACAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCATTGCCCTTAGGCCTTAAACCTCCTTCAATGGACAGTGTAATGTCTGAGCTCTCCAAACAAGGCATCCCTTGCAGGAAGGGCTCTAAACGCCGCTGA 1644 0.4416 MVCTANDLQGWKDFPKGLRVLLLEGDTNSASEIAAKLEAMDYIVSTFCNENEALSAISSSPKGFHVAVVEVSTSCPDGGFKFLENAKDLPTIMTSNSQCLNTTMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAEASALSESLKPVKESVESMLQLRTNNKLHENIISIDLEKVSKFSDNEHEQSPASDKYPAPSTPQLKQGARLVDDGDCHEQTTNCSIEKESVEHDGECKSVETSCENLNVESSPQSRKLEETLTKEEEGFANDSKGVSLNPQNKKFGNTSSIKSGALNDSCENKATRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVDGLTRHNVASHLQKYRMHKRQMMHGEEDRKWPNQRDQIHRNYSLQRPIMAYPPYHHSNHTLPPAPIYPMWGQPGSQTTGVQIWSPPPGYPLWQSTESWHWKPYPPGVHVDAWGSPMLPPPQPPYSPYTQSITGLHNAKAADYRFGMPRSSFEHHPAEEVVDKVVKEAISKPWLPLPLGLKPPSMDSVMSELSKQGIPCRKGSKRR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00365 547 SUPERFAMILY Homeodomain-like 304 363 IPR009057 -
Car08g00365 547 MobiDBLite consensus disorder prediction 526 547 - -
Car08g00365 547 Pfam Myb-like DNA-binding domain 309 358 IPR001005 -
Car08g00365 547 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 545 IPR044825 GO:0003700|GO:0045893
Car08g00365 547 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 306 361 IPR006447 GO:0003677
Car08g00365 547 Gene3D - 18 147 - -
Car08g00365 547 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Car08g00365 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 545 - -
Car08g00365 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 303 362 IPR017930 -
Car08g00365 547 MobiDBLite consensus disorder prediction 182 205 - -
Car08g00365 547 MobiDBLite consensus disorder prediction 272 288 - -
Car08g00365 547 Gene3D - 302 364 - -
Car08g00365 547 MobiDBLite consensus disorder prediction 263 288 - -
Car08g00365 547 SUPERFAMILY CheY-like 16 135 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00365 Car-Chr8 2970230 2976227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00365 1 538 Response Regulator Gene Family AT4G18020 48.854 1.12e-139 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Car08g00365 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00365 - - gmx:100784905 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00365 08 2970230 2976227 Car07g01321 07 12138243 12144101 PCT