Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00343 atgAAGGATAGTATTAACAAGGAGGCTATATGTGAACAAATGACAATCTTTTATGATGGGAAAGTATTTGTGTTTGATGATATTCCAGCTGAAAAAGCTAAAGAGATTATGTCTTTTTCCACCAAAGGAATTATCTCTCAAAACCAGAATAACTATACTCACACATTTGTTCATGACCACCCTCAAGTACCATCCATACCTATTATTTATGATTTACCAATGACTAGAAAAGCTTCACTTCATCGGTTTTTGGAGAAAAGGAAGGATAGAATTGCTGGAAGGGCACCATATCAAACAAGTAAATCAGCAACCCTTAATAAGCCAATTGATGAATCCATGGCATGGCTGTCCTTAGCACCTCAATCACCACAAGACAACAAATCTGAGTGTAGCTCAAGCTCTGTGTTATTTTGA 414 0.3623 MKDSINKEAICEQMTIFYDGKVFVFDDIPAEKAKEIMSFSTKGIISQNQNNYTHTFVHDHPQVPSIPIIYDLPMTRKASLHRFLEKRKDRIAGRAPYQTSKSATLNKPIDESMAWLSLAPQSPQDNKSECSSSSVLF 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00343 137 Pfam Jas motif 73 98 IPR018467 -
Car08g00343 137 Pfam tify domain 13 38 IPR010399 -
Car08g00343 137 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 7 119 IPR040390 -
Car08g00343 137 ProSiteProfiles Tify domain profile. 7 42 IPR010399 -
Car08g00343 137 PANTHER PROTEIN TIFY 10A 7 119 - -
Car08g00343 137 SMART tify_2 7 42 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00343 Car-Chr8 2699611 2700603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00343 4 119 Tify Gene Family AT1G19180 39.552 3.48e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Car08g00343 tify 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00343 K13464 - gmx:100306332 154.451