Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00338 ATGGGAAAACAAGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAACGGACCGCCAGAGAAGCCAGTGCTATGCAATGCATGCGGGTCTCGGTGGAGGACAAAAGGAACACTTGCAAATTATACTCCTTTACACGCCCGGGCTGAAACTGATGATTGTGATGATCAAAGGGCTACCAGGGTAAAGAGCATATCGTTAAATAAGAACAAAGAGGCGAAATTGCTCAAACGGAAGCAGAACCATGAAAATGTAGTCTCTGGAAGGATTGCATCTGATTACAACCATGGATTCCAAAAGGCTGTTGATGAAGATTATAGCACCCGATCAAGTTCGGGATCAGCGTTATCTAACTCAGAAAGCTGTGCACAATTTGGTGGCGCAGATGCTAGTGATCTGACAGGACCTGCTCAGTCAGTGATCTGGGATGCAACAGTGCCTTCGAAAAAGAGGACATGTGTCGGTCGGGCAAAGCCTTCTTCTGTCGAGAAACTCACAAAAGATTTATGCACTATTCTTCACGAGCAACAGTCTTATTTTTCTGCATCTTCCGAAGAAGATCTTCTTTTCGAAAGTGAAACACCAATGGTTTCTGTTGAGATAGGGCATGGAAGTGTTCTCATCAGGCATCCTAGCTATGTAGCTCGCGAAGAAGAGTCTGAGGCTAGCTCTCTTTCATTTGATAATAGGCAATATCCAATGAGTGAGGCGTATTCATATTCCGGTTCTGTTCTTATGCATGATAGCTCCAGTCGCTCGAACTTCTCATCTCAGGGAGCTGAAAAGGTCAGGAACTCAGCTTTTCACGGAATGAAGCACGAGCAACTTAAAAGTGACAAGTCTCAGCTTGAAAGAGTACAAATCCTTGGAAATCATGATTCACCACTGACTTTAATAGATTTAAATGATGTGGTAAACTATGAAGAGTTTTCGAGAATCTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTTTCTTCCTGTGATTGATACTGCTAAACTTTCTGATAGCCTTAAGGTCATGTTCGATAGTGTTCAATTCAAGGATAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGTGTCTTCGATATCTCTTTGTTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGATTTGCACTATCTAATCTCTCGAAGTCGAAATGGGTGGAACACTATCATTTTCTTAAGAGATGCAAAAATAGAGCTGAAAAATCCGATACTCCGGGATCTTATGGTATAGGATCAACCAATGTTGCAAACGCAAAGAGAATGCGTGATAGCAGAAATCAGAACTTTCCAGAGGTGAAGACAATAATGAGGAGCCCTAAAAGAACTATCACAAAGACTAGTTATGAAGGCAAAGTTGTAGATGATGAAACTTGCTATAATCCAAAAAGCCTCCTATTTCCTTTGCCACCTGATGCTAGCTCACACTTGCTAGATTCTTTTAACTTTGTTGAGGAAAGTTCTGATCAAGATCTGCTTCTAGAAGTGCCATCTAACAATTCTTTTCCACAGGCAGAGCTTCTACACCCGAGTTTAAGCTATGGTGCTCAAGCCAGCACTAGTAGTAGCTCGGCAGCATACTCACATCTTGTGAACCATTAA 1626 0.4231 MGKQGPCHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDCDDQRATRVKSISLNKNKEAKLLKRKQNHENVVSGRIASDYNHGFQKAVDEDYSTRSSSGSALSNSESCAQFGGADASDLTGPAQSVIWDATVPSKKRTCVGRAKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSYVAREEESEASSLSFDNRQYPMSEAYSYSGSVLMHDSSSRSNFSSQGAEKVRNSAFHGMKHEQLKSDKSQLERVQILGNHDSPLTLIDLNDVVNYEEFSRILTNEEQQQLLKFLPVIDTAKLSDSLKVMFDSVQFKDNLTYFQQLLAEGVFDISLLGAKPEDCKTLKRFALSNLSKSKWVEHYHFLKRCKNRAEKSDTPGSYGIGSTNVANAKRMRDSRNQNFPEVKTIMRSPKRTITKTSYEGKVVDDETCYNPKSLLFPLPPDASSHLLDSFNFVEESSDQDLLLEVPSNNSFPQAELLHPSLSYGAQASTSSSSAAYSHLVNH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00338 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 538 IPR044589 -
Car08g00338 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Car08g00338 541 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Car08g00338 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Car08g00338 541 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 538 - -
Car08g00338 541 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Car08g00338 541 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Car08g00338 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Car08g00338 541 Pfam Asx homology domain 283 367 IPR028020 -
Car08g00338 541 Gene3D - 288 392 IPR038108 -
Car08g00338 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Car08g00338 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00338 Car-Chr8 2657333 2662948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00338 1 517 C2C2-Gata Transcription Factor Family AT4G17570 54.545 2.00e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car08g00338 ASXH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00338 - - gmx:100798504 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00338 08 2657333 2662948 Car07g01283 07 11703193 11709116 PCT