Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00328 ATGGCTTCCCCTGTCTTTTTTTACATAATTTCCATTCTCTTTCTTCAACTTGTTTTAGTCTTTGGAAACGTTACTCTAAGTTCTATACTCTCCACCAACAACAACAATTCATGGTTATCACTTTCTGGTGAGTTTGCTTTTGGATTTCGTCAACTTAATAAAAACAACACAAACTTCTTTATGCTTGCAATATGGTACAACAAGATATCCGACAAAACCATTGTTTGGACTGCCCAAAACGACAACAACCTCGTACAAGCACCGAAAGGGTCACAGATTCAATTAACATCAGGTGGACTCACGTTAACAACTTCACAAGGTGATTCCCTTTGGACAGCACAACCAAACAATGCTGTTTCCTATGGCACCATGCTTGATACTGGTAACTTTGTTCTTGTTAACAAAACTTCTACTTTTGTTTGGGAAAGTTTCAATTTTCCCACTGATACCTTGTTGCCTAAGCAATCTCTTTATTTAAGTGGTACCTTAACTTCTAGATTCTCAGAAACCAATTTTTCAAGTGGAAGGTTCCAACTTTATTTCAATGGTGATAATGTTTGGATGAGTCCACTTGCATGGCCTACTCAATTCCGTTACAATTTTTACTATAGAATTGTTGTTCCTAGTAACTTTGATTCTTCAAGTTTAGTTTTTGATGAATTAGGTGATATTTATGTGGAAACAAATAATAATAATAATGGGACTAGAATTAAACTTCAAGATACAAAATGGAAAAATTTAGTTCTTGATTCTAAGTTGTATTATTATAGAGCAACACTTGATTATTATGGAGTTCTTACACAATATTCTCATCCAAGGGATATTAATGCAACACAAGGATGGAGTATTGTAAGATATGTTCCTGATAACATTTGCATTGCTATATTCAATGAAAAGGGTAGTGGTACTTGTGGTTATAATAGTTACTGTTCCATGGAAAATCAGAGACCTAGTTGTAAATGTCCTTATGGATATTCACTGATAGATCAAAGTAATCAATTTGGTGGGTGTCAATTAAATTTCACACTTGGTTGTGGAGCTGATAATGGTGAAGGATTGAATGTGAAGCAAGAAGATTTATATGAGTTCACTGTTGTTAAAGATGTGGATTGGCCTTTATCAGATTATGAAGAGATGCATCCTTATTCTCAACCAGATTGTCAACAATCTTGTTTGCATGATTGTATGTGTGCTATTGCTGTTTTCAATAACCAAACTTGTTGGAAGAAAAGATTGCCTCTTGCTAATGGAAGAGCACAAAGTGGTGGCCAATTAGTACTTGTCAAAACAAGAATTACTCCACTAGGAAGAGTTACTCCTCTTGGTCCTAATCCTTCTTTCGCCGCAAATGATTCAAAAAAAGACGATCAAGTTAAGCCGATTCTTCAAGGTTTACTTATTGGTTCAACTGTCATTAATAGCATACTTTTAGCTGTTGTTGTTTTTCTGACACTCTTGAAACCGAAAAGGGTTGTCCAAGGTGCAACTCTCTTCGAAACAAATTTGCATTCTTTTAGTTATGAAGCATTGAAAGAAGCCACATGGGGTTTTAGGGAAGAACTAGGTAGAGGTTCCTTTGGTATTGTTTACAAAGGTGAATTAAAAGCAGAAGCATCTTGTAATGTTGTTGCTGTCAAGAGATTGGATAGATTAATAGAAGACCGTgaaaaggaatttaagaccgagttgagagccattgctaaagttgatgtttacagctttggtgcaatgttgttggaaatcatTTGCTGCAGAAGAAGTGTGGTGCTGATGGAGTCAGGGGAGGAAGAGAAGGCAATTTTGACAGATTGGGCTTGTGATTGCTATATGGAAGGGAGAATAGACACTCTTGTGGAAAATGATCAAGAGGCCTTAGATGACATTGGCAGGTTAGAAAATTGGATAAAAATAGCAATTTGGTGCATTCAAGAGCATCCTGAAATGAGGCCAACAATGAGGATGGTTATACAAATGCTAGAAGGTGTGGTTGAAGTTCCTAACCCGCCATCGCCTTTTTCGTTCGATTCCATTCCTTGA 2037 0.35 MASPVFFYIISILFLQLVLVFGNVTLSSILSTNNNNSWLSLSGEFAFGFRQLNKNNTNFFMLAIWYNKISDKTIVWTAQNDNNLVQAPKGSQIQLTSGGLTLTTSQGDSLWTAQPNNAVSYGTMLDTGNFVLVNKTSTFVWESFNFPTDTLLPKQSLYLSGTLTSRFSETNFSSGRFQLYFNGDNVWMSPLAWPTQFRYNFYYRIVVPSNFDSSSLVFDELGDIYVETNNNNNGTRIKLQDTKWKNLVLDSKLYYYRATLDYYGVLTQYSHPRDINATQGWSIVRYVPDNICIAIFNEKGSGTCGYNSYCSMENQRPSCKCPYGYSLIDQSNQFGGCQLNFTLGCGADNGEGLNVKQEDLYEFTVVKDVDWPLSDYEEMHPYSQPDCQQSCLHDCMCAIAVFNNQTCWKKRLPLANGRAQSGGQLVLVKTRITPLGRVTPLGPNPSFAANDSKKDDQVKPILQGLLIGSTVINSILLAVVVFLTLLKPKRVVQGATLFETNLHSFSYEALKEATWGFREELGRGSFGIVYKGELKAEASCNVVAVKRLDRLIEDREKEFKTELRAIAKVDVYSFGAMLLEIICCRRSVVLMESGEEEKAILTDWACDCYMEGRIDTLVENDQEALDDIGRLENWIKIAIWCIQEHPEMRPTMRMVIQMLEGVVEVPNPPSPFSFDSIP 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00328 678 SUPERFAMILY Protein kinase-like (PK-like) 498 566 IPR011009 -
Car08g00328 678 ProSitePatterns Protein kinases ATP-binding region signature. 521 546 IPR017441 GO:0005524
Car08g00328 678 Gene3D Phosphorylase Kinase; domain 1 483 567 - -
Car08g00328 678 SMART blect_4 27 147 IPR001480 -
Car08g00328 678 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 567 676 - -
Car08g00328 678 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 568 - -
Car08g00328 678 Gene3D - 22 146 IPR036426 -
Car08g00328 678 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 189 IPR036426 -
Car08g00328 678 SUPERFAMILY Protein kinase-like (PK-like) 568 672 IPR011009 -
Car08g00328 678 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 12 568 - -
Car08g00328 678 Pfam D-mannose binding lectin 73 160 IPR001480 -
Car08g00328 678 ProSiteProfiles Protein kinase domain profile. 515 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00328 678 Gene3D Transferase(Phosphotransferase) domain 1 568 670 - -
Car08g00328 678 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Car08g00328 678 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 567 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00328 Car-Chr8 2589692 2592112 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00328 564 667 Receptor kinase-like Gene Family AT2G43690 36.538 1.08e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Car08g00328 B_lectin 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00328 - - gmx:100775269 659.833