Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00320 ATGACAATTGAAAAGGAAGATTTGTTGGGTTTGAGTTTAAGCTTAAGCTTCCCTCAAAATCCCCCAAATCCTCAACCCTCTTCAACTCGTTCCTCTTCACCTTCTGGTTACAATCCACACAAACTCTCTTGGAATGATGCTTTCACTTCTTCAGATCGTGATTCGGAAACATGCAGAGGAGAAGGAAGATCTTTAGTACTAGTGGGAGGAATCGATGTGAATCGGTTACCTTCGGGAGGAGATTGTGAAGAAGAAACAGGGGTTTCATCTCCGAACAGCACGGTATCGAGTGTGAGTGGTAAACGTAGTGAAAGGGATGTTACTTGTGAAGATATTGAGATGGAGAGAGATGGTTGTAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCTAGGAAAAAACTTAGACTCACAAAAGATCAATCAATCATTCTCGAAGAGAGTTTCAAAGAACACAACACCCTCAACCCCAAACAAAAGTTGGCACTAGCAAAACAATTGGGTCTTAGAGCAAGACAAGTTGAGGTGTGGTTTCAGAATCGTAGAGCAAGGACAAAGCTGAAACAAACGGAGGTGGATTGTGAGTTTTTGAAAAGGTGTTGTGAGAATCTAACGGAGGAAAATAGGCGGTTACAAAAGGAAGTACAAGAGCTAAGAGCACTGAAACTTTCCCCACAATTCTACATGCAAATGACTCCACCTACAACACTTACCATGTGCCCATCTTGTGAGCGTGTAGCTGTTCCACCATCTACCGTTGATGTTGCCACGCGTCGTCATCCTATGGTTCCAACTCATCCTCGGGCTTTTCCTATGGGCCCATGGGCCACAACTGCTCCTATTCAACAACAACACAGGCCCTTTGATACACTCCGTCCTAGATCTTGA 888 0.4392 MTIEKEDLLGLSLSLSFPQNPPNPQPSSTRSSSPSGYNPHKLSWNDAFTSSDRDSETCRGEGRSLVLVGGIDVNRLPSGGDCEEETGVSSPNSTVSSVSGKRSERDVTCEDIEMERDGCRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPSTVDVATRRHPMVPTHPRAFPMGPWATTAPIQQQHRPFDTLRPRS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00320 295 MobiDBLite consensus disorder prediction 1 62 - -
Car08g00320 295 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Car08g00320 295 MobiDBLite consensus disorder prediction 75 105 - -
Car08g00320 295 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Car08g00320 295 MobiDBLite consensus disorder prediction 29 51 - -
Car08g00320 295 MobiDBLite consensus disorder prediction 85 102 - -
Car08g00320 295 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Car08g00320 295 Coils Coil 187 224 - -
Car08g00320 295 PANTHER - 8 284 - -
Car08g00320 295 CDD homeodomain 132 189 IPR001356 GO:0003677
Car08g00320 295 Gene3D - 136 186 - -
Car08g00320 295 SUPERFAMILY Homeodomain-like 126 189 IPR009057 -
Car08g00320 295 Pfam HD-ZIP protein N terminus 4 106 IPR006712 GO:0005634
Car08g00320 295 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 8 284 - -
Car08g00320 295 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Car08g00320 295 SMART HOX_1 130 192 IPR001356 GO:0003677
Car08g00320 295 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Car08g00320 295 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Car08g00320 295 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00320 Car-Chr8 2552602 2554829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00320 1 295 Homeobox Transcription Factor Family AT4G16780 61.873 9.73e-104 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car08g00320 HD-ZIP_N 7.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00320 K09338 - gmx:100813367 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00320 08 2552602 2554829 Car07g01266 07 11526963 11528435 PCT