Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00317 ATGAAGAAATCATGTAATGATGGGAATATTCATCCATTGTATCGTGGCGTACGCATGCGTCAATGGGGAAAATGGGTTTCGGAAATTAGAGAGCCCAAAAAAAAGTCCAGAATTTGGCTCGGTACTTTTCCAACTCCAGAAATGGCAGCTCGAGCTCATGACGTTGCAGCCCAAGCCATCAAAGGTAGTTCGGCTTACCTCAATTTCCCCGAATTAGCCGATCACCTTCCGCGCCCAGCCACCACTTCTCCTAAGGACATTCAAGCCGCCGCCGCCAAGGCAGCTACAATGGGCTATCTTCATGAAACTCAAAATTACTACCAAGCCCAAGCCCACGACAACAAAAAAACGTCAAATTCATGTTTACGTGACGAGGATGACACATTCTTCGACCTCCCTGATCTCTTAGTCGACTTAAATAACAGTTCACGTGAATTTAATAACGCCTCTACCTCCATGCCGTGGGTCGTCGCCGGAGCTGAACATCCTGACTCAGGTTTTGGTCTTAATGAGACTTTCCCGGGGGAACCTTACTAA 537 0.473 MKKSCNDGNIHPLYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAAQAIKGSSAYLNFPELADHLPRPATTSPKDIQAAAAKAATMGYLHETQNYYQAQAHDNKKTSNSCLRDEDDTFFDLPDLLVDLNNSSREFNNASTSMPWVVAGAEHPDSGFGLNETFPGEPY 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00317 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 6 156 - -
Car08g00317 178 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Car08g00317 178 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Car08g00317 178 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Car08g00317 178 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Car08g00317 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 156 - -
Car08g00317 178 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Car08g00317 178 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Car08g00317 178 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Car08g00317 178 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00317 Car-Chr8 2520456 2520992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00317 2 173 AP2-EREBP Transcription Factor Family AT2G44940 46.860 1.20e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car08g00317 AP2 4.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00317 - - gmx:100812293 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00317 08 2520456 2520992 Car07g01261 07 11443952 11444867 PCT