Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00302 ATGGAGGAACAGAATACAAAACTCTACGCAGTATTGAACTTATCCCCCGAAGCTTCCGATGAAGAAATTCGCAAAACTTATCGTCAATGCGCGCAAGTTTATCATCCCGATAAGTACCAATCTTCTCCTATGAAACTTATTGCTACCGATAATTTTCAACGAGTATCTGAAGCATATGAGATTCTATCTGATCCAAATAAAAGAAAAGTTTATGATATCTATGGCATGGAAGGGTTGATTTCTGGTTTGGAACTTGGTCCGGTGTTGAATAAAGCTGAAGAGGTTAAAGAGATTAAAGCAGAATTGAAGAGATTGAAGAGATGGAAGGAAAATGAAAAGATGGCGGCCGCGTATTTTCAATCTTCGGGTACAATTCTGGCAAATGTGTCTTTGCCACGCTGTCTTCATGGTGATGGTCTCTTCAGTAGAATGGAAATGACGAGTCAAATTAAGTCTTGGTTATCAAAGCGAAGTGTTGTTACGATTGGTGGCAATTTAGAAGTTGATCGCGGTAAAGGTGGTGGAGCTGCTTCTGCTGTACTTAATCATCAACTTTCCAAAGTTTCGTCAATAGAATTTATGGCTTCAGCTGGTTTACGCGCACTAATTGGGGTGCGGGCATCTCGGCAATTCTCATCACAGTCATCTGCAGCAATGGGACTATCAATGTCTTTGAAAAATGGTTCCTTGAAGCTTTCTAGTTCATGCACCCGGCGACTGTCAAAAACAACAAATGGACATATACAACTCAGGTTGGGATCACAATCATCCGTAGCTCTAAGGTTGGAGAAAAATGACCAGAGAAGGTCTGCCACTGGACAAATAGAGTTCGGCATAGGTTCTTTTGATACAGAAGTTCAGTATACTCGTCACTTTTCTTCTGATTCTCGTGGCTGCATTGCAGGAAGAGTTGGGAGTTCTTCCATTGAGATTGAAGTTAGTGGTGGAAGGAATTTATCCGAATACAGTACTGTGTGCTGGAGTTATGTAGTAGGGATTCAGGGTATTTTCTGGAGATTTAAACTCTATCGCAGAAGTCAGAAGTTGATTATTCCTATTTTGCTGACAACGCATTTGAACCCTGTGTTTGCTACTGGAGCATTAGTTGTTCCAGCATCTTTTTACTTTTTTCTGAAGAAACTTTTCATTAACCCGTATTACCGTAAAAGGAATAAGCAGAAGGCTCTAGAGAAGGAGGAAAAAATTTCTGCTCAGATTCTAGAAAGAAGGGCTGCAGCCGAGAAAGCTCATAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAGGCAATTAAAAATGGGTGGACTGGTAATTATAAAAGCGCTGTATGGAAATGATACAATTTTGAAAAATTTGTATTCATCAAGGGAAGCAAGTTTTGAATCTACTTTAGGAGTCATTGATGTTACAACACCTCTGAATTTTTTAGTTGATGATTCTGGTCAACTTAAGCTTCACGAAGGTGTAAAGAAATCAGGAATCATGGGATTTTGCGATCCTTGTCCAGGAAATTGTGAACTGTTGTTGTACGTAGAGTATGCTTATGCTAGCGATCAATACAAGGTCTTGGTTGGTGACTATGAAGAATTACTGATACCCCATGACACCCACATGATATAA 1623 0.3956 MEEQNTKLYAVLNLSPEASDEEIRKTYRQCAQVYHPDKYQSSPMKLIATDNFQRVSEAYEILSDPNKRKVYDIYGMEGLISGLELGPVLNKAEEVKEIKAELKRLKRWKENEKMAAAYFQSSGTILANVSLPRCLHGDGLFSRMEMTSQIKSWLSKRSVVTIGGNLEVDRGKGGGAASAVLNHQLSKVSSIEFMASAGLRALIGVRASRQFSSQSSAAMGLSMSLKNGSLKLSSSCTRRLSKTTNGHIQLRLGSQSSVALRLEKNDQRRSATGQIEFGIGSFDTEVQYTRHFSSDSRGCIAGRVGSSSIEIEVSGGRNLSEYSTVCWSYVVGIQGIFWRFKLYRRSQKLIIPILLTTHLNPVFATGALVVPASFYFFLKKLFINPYYRKRNKQKALEKEEKISAQILERRAAAEKAHKLQQNVANRKRNRQLKMGGLVIIKALYGNDTILKNLYSSREASFESTLGVIDVTTPLNFLVDDSGQLKLHEGVKKSGIMGFCDPCPGNCELLLYVEYAYASDQYKVLVGDYEELLIPHDTHMI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00302 540 PRINTS DnaJ domain signature 9 27 IPR001623 -
Car08g00302 540 PRINTS DnaJ domain signature 27 42 IPR001623 -
Car08g00302 540 PRINTS DnaJ domain signature 47 67 IPR001623 -
Car08g00302 540 PRINTS DnaJ domain signature 67 86 IPR001623 -
Car08g00302 540 PANTHER CHAPERONE PROTEIN DNAJ 13 2 539 IPR042162 -
Car08g00302 540 Coils Coil 409 429 - -
Car08g00302 540 Pfam DnaJ domain 8 72 IPR001623 -
Car08g00302 540 Pfam DnaJ-like protein C11, C-terminal 385 534 IPR024586 -
Car08g00302 540 Gene3D DnaJ domain 1 83 IPR036869 -
Car08g00302 540 ProSiteProfiles dnaJ domain profile. 7 75 IPR001623 -
Car08g00302 540 SUPERFAMILY Chaperone J-domain 5 86 IPR036869 -
Car08g00302 540 SMART dnaj_3 6 67 IPR001623 -
Car08g00302 540 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Car08g00302 540 Coils Coil 91 112 - -
Car08g00302 540 CDD DnaJ 9 64 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00302 Car-Chr8 2382402 2390081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00302 9 74 C2H2 Transcription Factor Family AT1G74250 44.118 2.14e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00302 K09531 - gmx:100817782 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00302 08 2382402 2390081 Car08g00302 08 2382402 2390081 ECH