Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00301 ATGGATGAACAGAACGAAGAAGCACAAGACAATAAAAAACTATACGCAGTATTGAACTTATCCCCCGAAGCTTCCGATGAAGAAATCCGCAAAGCTTATCGTCAATGGGCGCAAGTTTATCATCCCGATAAGTACCAATCTCCTCCTATGAAACTTATTGCTACGGAGAATTTTCAAAAAGTATGTGAAGCGTATGAGATTCTGTCAGATCCAAATAAAAGACAAGTTTATGATATCTATGGCATGGAAGGTTTGATTTCTGGTTTGGAACTTGGTCCGATGTTGAATAAAGCTGAAGAGATTAAAGCTGAATTGGAGAGACTGAAGAGAAGGAGGGAACAGGAAAAGTTGGCGGCACATTTTCGATCTTCCGGTACAATTCTGGCCAATATGTCTTTGCCAAACTTTCTTGATGGCGATGGCCTATTCAGAGGAATGGCAATGACGAGTGAAATTCAGTCTCGGATGTCAAAGCAAACTATTGCTACGATTGGTGGCAATTTAGCAGTTGATGGACATGAAGGGGGTGGAGCTGCTTCTGCTGTACTTAGTCATCAAATTTCCGAAGTTTCGTCAATAGAATTTATGGCTTCCGCTGGTTTACGCGCACTATTAGGGGTGCAGACATCTCGACATCTGTCATCACACTCATCTGCAACAATGGGATTATCAATGTCTTTGAAAGATGGTTCATTGAATCTTTCTAATGCATGGACCCGCCAACTGTCAGAAACAACAAATGGACATATACAACTCATGTTGGGATCACAATCATCTGTAGCTGTAGGGTGGCAGAAAAAAGATCAGAGAAGGTCTGCCTCTGGAGAAATAAAGTTCGGCACAGGTTCTTTTGAGACAGCAGTTCAGTATACTCATCGCTTTTCTTCTAAATCTCATGGTTGCATTGCAGGAAGAGTTGGGAGTTCTTCTATTGAGATTGAAGTTGGTGGTGGAAGGAAGTTATCTAAATTCAGTACTGTGCGCTGGTTGTATGTTGTAGGAATTCAGGGTATTTCCTGGAGATTTGAACTCTATCGCGGGGGTCAGAAGTTGGTTATTCCTATTTTGCTGACAACGCATTTGAACCCTGTGTTTGCTACTGGAGCATTAGTTGTTCCAACATCTTTTTACTTTATTCTGAAGAAATTTTTGATTAAACCGTATTACCATAAAAGGAATAAGCAGAAGGCTCTAGAGAAGGAGGAGAAAACTTCTGCTCAGGTTCAAGAAGGAAGGGCTGCAGCAGAGAAAGCTCAACAATTACAACAAAATGTGGCTAATAGGAAAAGAAATAAGCAATTAGAAACGGGTGGACTGGTTATTATGAAAGCGCTATATGGAAATGATACAATTTTGAAAAACTTGTATTCGTCAAGTGGAACCAGTCCTGAATCTACTTCAGGAGTCATCGATGTTACAACTTCTCTGAATTTTCTAGTTGATGATTCTGGTCATCTAAAGCTTCACGAAGGTGTAAAGAAATCAGGAATTATGGGCTTTTGTGATCCTTGTCCAGGAGATTCTAAACTCTTGTATGTAGAATATGCTTATGCTGGCAATGAACACAAGGTCTTGGTTGGGGACTATGAAGAATTACTGATACCCCAGGGTACCCACATGATATAA 1626 0.4047 MDEQNEEAQDNKKLYAVLNLSPEASDEEIRKAYRQWAQVYHPDKYQSPPMKLIATENFQKVCEAYEILSDPNKRQVYDIYGMEGLISGLELGPMLNKAEEIKAELERLKRRREQEKLAAHFRSSGTILANMSLPNFLDGDGLFRGMAMTSEIQSRMSKQTIATIGGNLAVDGHEGGGAASAVLSHQISEVSSIEFMASAGLRALLGVQTSRHLSSHSSATMGLSMSLKDGSLNLSNAWTRQLSETTNGHIQLMLGSQSSVAVGWQKKDQRRSASGEIKFGTGSFETAVQYTHRFSSKSHGCIAGRVGSSSIEIEVGGGRKLSKFSTVRWLYVVGIQGISWRFELYRGGQKLVIPILLTTHLNPVFATGALVVPTSFYFILKKFLIKPYYHKRNKQKALEKEEKTSAQVQEGRAAAEKAQQLQQNVANRKRNKQLETGGLVIMKALYGNDTILKNLYSSSGTSPESTSGVIDVTTSLNFLVDDSGHLKLHEGVKKSGIMGFCDPCPGDSKLLYVEYAYAGNEHKVLVGDYEELLIPQGTHMI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00301 541 Pfam DnaJ domain 14 78 IPR001623 -
Car08g00301 541 Gene3D DnaJ domain 1 89 IPR036869 -
Car08g00301 541 PRINTS DnaJ domain signature 15 33 IPR001623 -
Car08g00301 541 PRINTS DnaJ domain signature 33 48 IPR001623 -
Car08g00301 541 PRINTS DnaJ domain signature 53 73 IPR001623 -
Car08g00301 541 PRINTS DnaJ domain signature 73 92 IPR001623 -
Car08g00301 541 Pfam DnaJ-like protein C11, C-terminal 387 535 IPR024586 -
Car08g00301 541 Coils Coil 95 118 - -
Car08g00301 541 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Car08g00301 541 ProSiteProfiles dnaJ domain profile. 13 81 IPR001623 -
Car08g00301 541 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Car08g00301 541 SMART dnaj_3 12 73 IPR001623 -
Car08g00301 541 SUPERFAMILY Chaperone J-domain 10 77 IPR036869 -
Car08g00301 541 CDD DnaJ 15 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00301 Car-Chr8 2370991 2379616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00301 15 80 C2H2 Transcription Factor Family AT1G74250 44.118 1.85e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00301 K09531 - gmx:100817782 838.95