Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00286 ATGGATGTTGCTTCAGATCCCAGGATCGGCCTTATGCGCCTTGTGTGGTGGCAGGAAGCCATAGATAAAATGTTTGCCAATAAATTGATTGAACACCCAACAGCACTGGCCCTGTCAAGCGTGATAGCAGAGACCAAAATTAGTAAGACATGGTTGAAACGATCTGTTGAAGCCCGGATCAACGATGCAAGAAGAGAGGCTACAGACATTCCCGAAACAATGGAAGAATTGGAGAAATATGCTGAAGACACTGTATCTACTATGCTGTACTTGACACTTCAAGCTGGTGGTATCATGTCTACTGCAGCTGACCATGCAGCCTCACATATTGGCAAGGCTAGTGGTATTCTGTTGCTCCTTAAATCACTGCCTTATCATGCTGGTCACAACCGGCATTTTTCTTACATACCAAGAGCAATAGCATCCAAGCACGGGTTGATAGTTAAGCAGGAAGGTCAAGGAGAGAGATGGCTGGATTCTCGTGAGGGTCTTTGTGAAGCAGTTTATGAAATGGCATCAGTTGCCAATGCACACTTACAAAAGGCACGAAAAATAGCCAAGAGTGTGCCTGCTGAGGCTCTCCCAGTGCTCCTGCCAGCTCTGCCTGCTCAGGTTCTCTTGGATTCTCTACGTCGGGTGCAATTTGATGTGTTTGATCCGAGGCTAGCACGAGGGGTGCTGGGAATACCACCTTTGTGCTTCCATGTTCCTCATTCTGACTTTTGGTGCTCACCGAAGCACATCTATGGTGTCCCTGGAAACTATTGTTTAGATGCTTCAACTATTCTATTCAACATCTTCCATTTTTCTTTTTTCCAAAGGAAATTAAAAAGAGATTTATTTCATCAGATCCACACTACACAGGAATTGGAGTCTTTATCTTCTAAGAAGATCAAGGTTGAATTTGAATTATCTACAGGGGATATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCATCCCACTGATGAAGAACTTGTTGATCACTACCTTAGGAAAAAGATAGCTTCTAAAAGGATTGATCTAGATATTATAAAAGATGTTGATCTCTATAAAATTGAACCATGGGATCTACAAGAATTATGCAAAATAGGAAGTGATGAACAAAGTGAATGGTATTTCTTCAGTCATAAAGATAAGAAGTATCCAACTAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCAACAGGAAGAGACAAGGCAATTTACTTAAAGCATTGTCTGATTGGAATGAGAAAAACTCTAGTTTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACTAATCAAAATGGAACTACTCAGGAAGAAGGATGGGCTGTGTGTAAAGTGTTCAAGAAACGAATAGTTACAACAATGAGGAAAATGGAAGATTCCCCCTGTTGGTATGATGATCAGGAGTTGGATCAATTACAATACATTAATATACTCAATGATGCTAATTTCCTCCAACTTCCACAACTAGAAAGCCCGAAAGTTCCTTTCCAGTGCTCATCATCACATAATTCACTCATACAAGAACAACACATACAAGCACAACAACAACATTGCCAGCAACAAAATATGCAACTCTTTTCTGGTCGCAATGATGTTCAAGATTGGCGACTATTAGACAAATTTGTAGCTTCTCAACTAAGTCGCGATATTCAAGATGCTTCCAAGGAAACTAGTAGTTATTGCAATGTGGATGAACAAATTGCTAATTTGCTAGAAAATGATGAATCCAAAAAATCGGAAACTGGTCAGGAATATGCGACTTCAACCTCCAACTCCAGTTGCCAGATTGACATGTGGAAGTGA 1851 0.4073 MDVASDPRIGLMRLVWWQEAIDKMFANKLIEHPTALALSSVIAETKISKTWLKRSVEARINDARREATDIPETMEELEKYAEDTVSTMLYLTLQAGGIMSTAADHAASHIGKASGILLLLKSLPYHAGHNRHFSYIPRAIASKHGLIVKQEGQGERWLDSREGLCEAVYEMASVANAHLQKARKIAKSVPAEALPVLLPALPAQVLLDSLRRVQFDVFDPRLARGVLGIPPLCFHVPHSDFWCSPKHIYGVPGNYCLDASTILFNIFHFSFFQRKLKRDLFHQIHTTQELESLSSKKIKVEFELSTGDMNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQSEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYLKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTTQEEGWAVCKVFKKRIVTTMRKMEDSPCWYDDQELDQLQYINILNDANFLQLPQLESPKVPFQCSSSHNSLIQEQHIQAQQQHCQQQNMQLFSGRNDVQDWRLLDKFVASQLSRDIQDASKETSSYCNVDEQIANLLENDESKKSETGQEYATSTSNSSCQIDMWK 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00286 616 SUPERFAMILY NAC domain 311 464 IPR036093 GO:0003677|GO:0006355
Car08g00286 616 MobiDBLite consensus disorder prediction 598 616 - -
Car08g00286 616 MobiDBLite consensus disorder prediction 589 616 - -
Car08g00286 616 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 312 483 - -
Car08g00286 616 ProSiteProfiles NAC domain profile. 315 464 IPR003441 GO:0003677|GO:0006355
Car08g00286 616 Gene3D NAC domain 324 467 IPR036093 GO:0003677|GO:0006355
Car08g00286 616 Pfam No apical meristem (NAM) protein 316 443 IPR003441 GO:0003677|GO:0006355
Car08g00286 616 Pfam Squalene/phytoene synthase 2 222 IPR002060 GO:0009058
Car08g00286 616 PANTHER OS02G0643600 PROTEIN 312 483 - -
Car08g00286 616 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 492 596 - -
Car08g00286 616 PANTHER OS02G0643600 PROTEIN 492 596 - -
Car08g00286 616 Gene3D Farnesyl Diphosphate Synthase 1 218 IPR008949 -
Car08g00286 616 SUPERFAMILY Terpenoid synthases 2 225 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00286 Car-Chr8 2247947 2258802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00286 309 616 NAC Transcription Factor Family AT1G12260 57.714 2.59e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car08g00286 SQS_PSY 1.8e-36 CL0613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00286 - - gmx:100783529 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00286 08 2247947 2258802 Car08g00286 08 2247947 2258802 ECH
Car08g00286 08 2247947 2258802 Car07g01213 07 10920974 10926437 PCT