Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00285 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCCGCATTCTCTTCCGGCGATTTTTCATCCGCCATCCGTCACTTCTCAGAAGCCATCGATCTTTCCCCTAACAACCACGTCCTCTATTCAAACCGATCCGCAGCTTACGCTTCTCTCCAAAACTACACCGACGCTTTATCCGACGCCAAAAAAACCGTCGAACTCAAACCCGATTGGTCCAAAGGCTACAGCCGTCTCGGAGCCGCTCATCTCGGTCTCTCTCAATTTGACGACGCCGTTTCGTCTTACAAAAAAGGTCTCGAAATTGATCCTAATAATGAACCACTCAAATCAGGTTTAGCCGATGCTCAAAAAGCGGCTTCGGCCGCGGCTTCTAGGTCACGTTCTGCGCCGTCGGCTAATCCATTTGGTGATGCTTTTTCCGGGCCTGAGATGTGGGCTAAACTCACTGCTGATCCTGCAACTAGGGTTTACCTTCAACAACCTGATTTCGTGAAGATGATGCAAGATATTCAGAAGGATCCAAATAATCTCAATTTGTATTTGAAGGATCAAAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTCGAAGCCCTGGTGATGAATTTGATATACCTGAGACTAATTCGCCTTCGTCGGCTTCTTCTTCTGAGAGGAAGAGGGCCGCTGAAGCTGAGCCTGTTAAGCAACCTGAGCCGGAGCCGGAGCCGATGGAAGTGGCTGATGAGGAAAAAGAAGCAAAGCAGAGAAAGGTTGAGGCACAGAAGGAAAAGGAGGCTGGTAATGCAGCGTATAAGAAGAAGGACTTTGACACTGCGATTCATCATTACTCGAAAGCTTTGGAATTGGATGATGAAGACATTTCCTTTCTCACTAACCGTGCTGCTGTGTACTTGGAAATGGGAAAGTATGAGGATTGTGTAAAAGATTGTGATAAGGCTGTTGAAAGAGGACGAGAACTACGATCAGACTACAAGATGGTAGCAAGAGCTTTGACAAGGAAGGGTACTGCCTTGGGCAAAATGGCAAAATGCTCTAAAGATTATGAACCTGTCATTGAGACATATCAAAAAGCACTTACAGAGCACCGCAACCCAGACACCCTGAAGAAACTTAATGAAGCTGAGAAGGCTAAGAAAGAACTAGAACAACAAGAATACTTTGATCCAAATTTGGCTGATGAGGAAAGAGAAAAAGGGAATGAATTTTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACTGAGTCCCTAAGAAGAAACCCGAAAGAGCCTAAGACTTATAGTAACAGAGCTGCGTGTTACACCAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCAACTTTCACCAAGGGTTATACCCGAAAAGGTGCTGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATATAAGGAGGGGTTGAAACATGACCCCAACAACCAGGAGTTGCTTGATGGCATTGGAAGGTGTGTTCAACAAATTAATAAGGCCAGCCGTGGAGATTTAAGTCCTGAAGAGTTGAAGGAGAGACAGGCCAAAGCTATGTCAGATCCAGAGATACAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCTAAGTCTGCACAGGAACATACCAAGAACCCAATGGTGATGGAGAAAATCCAAAAGCTGATCAGTGCCGGAATTGTCCAGATGAGGTAA 1749 0.4488 MADEAKAKGNAAFSSGDFSSAIRHFSEAIDLSPNNHVLYSNRSAAYASLQNYTDALSDAKKTVELKPDWSKGYSRLGAAHLGLSQFDDAVSSYKKGLEIDPNNEPLKSGLADAQKAASAAASRSRSAPSANPFGDAFSGPEMWAKLTADPATRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIRSPGDEFDIPETNSPSSASSSERKRAAEAEPVKQPEPEPEPMEVADEEKEAKQRKVEAQKEKEAGNAAYKKKDFDTAIHHYSKALELDDEDISFLTNRAAVYLEMGKYEDCVKDCDKAVERGRELRSDYKMVARALTRKGTALGKMAKCSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPNLADEEREKGNEFFKQQKYPEAIKHYTESLRRNPKEPKTYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYKEGLKHDPNNQELLDGIGRCVQQINKASRGDLSPEELKERQAKAMSDPEIQNILQDPVMRQVLVDFQENPKSAQEHTKNPMVMEKIQKLISAGIVQMR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00285 582 Pfam Tetratricopeptide repeat 7 62 - -
Car08g00285 582 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Car08g00285 582 MobiDBLite consensus disorder prediction 199 263 - -
Car08g00285 582 Coils Coil 238 260 - -
Car08g00285 582 Pfam TPR repeat 261 302 - -
Car08g00285 582 Pfam TPR repeat 400 441 - -
Car08g00285 582 SUPERFAMILY TPR-like 253 381 IPR011990 GO:0005515
Car08g00285 582 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Car08g00285 582 PANTHER TPR REPEAT CONTAINING PROTEIN 1 581 IPR045248 GO:0006457|GO:0030544|GO:0051879
Car08g00285 582 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Car08g00285 582 Gene3D - 130 196 - -
Car08g00285 582 Gene3D Tetratricopeptide repeat domain 251 387 IPR011990 GO:0005515
Car08g00285 582 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Car08g00285 582 SMART CBM 139 178 IPR006636 -
Car08g00285 582 SMART CBM 531 570 IPR006636 -
Car08g00285 582 Gene3D - 513 582 - -
Car08g00285 582 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Car08g00285 582 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Car08g00285 582 Pfam Tetratricopeptide repeat 462 494 IPR001440 GO:0005515
Car08g00285 582 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 581 - -
Car08g00285 582 Pfam STI1 domain 140 193 IPR041243 -
Car08g00285 582 Pfam STI1 domain 523 574 IPR041243 -
Car08g00285 582 SMART tpr_5 36 69 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 70 103 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 288 321 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 427 460 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 254 287 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 461 494 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 393 426 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 2 35 IPR019734 GO:0005515
Car08g00285 582 SMART tpr_5 329 366 IPR019734 GO:0005515
Car08g00285 582 MobiDBLite consensus disorder prediction 219 263 - -
Car08g00285 582 Gene3D Tetratricopeptide repeat domain 392 512 IPR011990 GO:0005515
Car08g00285 582 ProSiteProfiles TPR repeat profile. 427 460 IPR019734 GO:0005515
Car08g00285 582 Coils Coil 365 385 - -
Car08g00285 582 SUPERFAMILY TPR-like 392 505 IPR011990 GO:0005515
Car08g00285 582 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Car08g00285 582 ProSiteProfiles TPR repeat profile. 254 287 IPR019734 GO:0005515
Car08g00285 582 ProSiteProfiles TPR repeat profile. 393 426 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00285 Car-Chr8 2241691 2245741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00285 392 504 U-box Gene Family AT3G07370 26.549 6.89e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00285 K09553 - gmx:100816776 934.095