Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00283 ATGAATGATCTAATGACAAAATCATTCACCAGCTACGTAGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTATTCCAAAAGAAGGTGTTAATGTTGAATTAACATCTTCAATAACCCATTTGGAAACCGATATGAATTTGTTCTTAGAAGAGGCAGAGAAAGTAAGAACAGAAATGGGTCAAATTCGCGATATCCTAACAAAGCTTGAACAATCAAATGAAGAGAGCAAGTCACTTCACAAAACGGAAGCTTTGAAATCATTGAGGGAAAGAATTAACACTGATATTGTAACTGTTTTGAAGAAAGCAAGGTGTATGAGGACTCAATTGGAAGAAATGGATCGTGCTAATGATGCTAATAGAAGACTCTCTGGACTTAAAGATGGTACACCAGCAATTTATAGAACTAGAATTGCTGTTACTAATGGGTTGCGTAAGAAGCTCAAGGAGATTATGATGGAGTTTCAGGGACTGAGACAGAGAATGATGAGTGAATACAAAGAGACAGTAGGGAGAAGGTATTATACAGTGACAGGTGAACATCCAGATGAAGAAGTAATTGAGAAGATAATATCAAATGGAGATGATGAAGGGTTTTTAGGAAAGGCAATACAAGAACATGGAAGAGGGAAAGTACTAGAAACTGTGGTGGAGATACAAGACAGACATGATACAGCAAAAGAGATTGAGAAGAGTTTGTTGGAACTCCATCAAGTGTTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGGACTAAGAATCTTCATAGTGCTAAACAATATCAGAGAAGTGGAAGAAAATGGATGTGCATTGGGAttatacttttgcttattcttattctcatcattgttattcCCATTGCCACCAGTTTCAGCACTTCTTAA 960 0.3531 MNDLMTKSFTSYVDLKKAAMKDEVDLEAGIPKEGVNVELTSSITHLETDMNLFLEEAEKVRTEMGQIRDILTKLEQSNEESKSLHKTEALKSLRERINTDIVTVLKKARCMRTQLEEMDRANDANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKEIMMEFQGLRQRMMSEYKETVGRRYYTVTGEHPDEEVIEKIISNGDDEGFLGKAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHSAKQYQRSGRKWMCIGIILLLILILIIVIPIATSFSTS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00283 319 CDD SynN 53 197 IPR006011 GO:0016020
Car08g00283 319 SMART tSNARE_6 216 283 IPR000727 -
Car08g00283 319 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 312 - -
Car08g00283 319 Pfam SNARE domain 258 309 IPR000727 -
Car08g00283 319 CDD SNARE_syntaxin1-like 220 280 - -
Car08g00283 319 ProSitePatterns Syntaxin / epimorphin family signature. 227 267 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car08g00283 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 221 283 IPR000727 -
Car08g00283 319 Gene3D - 217 317 - -
Car08g00283 319 PANTHER SYNTAXIN 5 312 IPR045242 -
Car08g00283 319 Gene3D - 50 178 - -
Car08g00283 319 Pfam Syntaxin 53 256 IPR006011 GO:0016020
Car08g00283 319 SUPERFAMILY t-snare proteins 48 276 IPR010989 GO:0016020|GO:0016192
Car08g00283 319 SMART SynN_4 45 172 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00283 Car-Chr8 2225847 2227905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00283 1 319 SNARE and Associated Proteins AT1G08560 65.732 1.12e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00283 K08486 - gmx:100816016 511.916