Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00277 ATGAATTCCATCCATCTCATCCTATCTCTGTTTCTCCTTTTTACATTTTCAACTCAACAAACAGTTAACGGAAATGCAGAACTAAGGGCTCTAATGGACTTAAAATCCTCTCTAGATCCAGAGGGAAAGATCCTTACCTCATGGATCAGTGATGGTGATCCATGCAGTGGTTCTTTTGAAGGAATTGCGTGTAATGAACATTGGAAAGTGGCAAATATCTCTTTGCAAGGAAAAGGTCTTTCAGGTTGGATTTCTCCAGCTGTGTCTGAACTCAAATGCTTGTCTGGATTATACTTGCATTACAATAATCTTTCTGGTGAGATACCGTCTCAGATTTCGAATCTCACTGAATTGGTTGATCTTTATCTTGATGTGAATAGTTTATCTGGAACAATTCCTCATGAGGTTGGCAACATGGCTAGTCTACAAGTACTCCAATTGGGAGATAATCAATTGGTGGGGAATATACCTACACAGATGGGCTCCTTGAAGCAGTTAACTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCTTAGTTTGGGGAACTTGGAGAATCTTAGTAGGCTAAATTTGAGCTTCAACAACTTCACGGGTTCTATACCAGCAACACTAGCCACTATTGCACATTTGGAAGTTCTTGATATTCAAAATAATTCTTTATCAGGAATTGTTCCTTCTGCATTGAAGAGACTTGGTGAAGGATTCCAAGGGAGAAACAATCCAGGTTTATGTGGAGTAGGGCTTTCTAACTCCAGAGCTTGCGAGAACGATCCAGATTTAAACGCAAGCGATGTCGGTACCACAGATCAAGACCATCTCAAAAATATTAACAATACTGCAACGCCTAGGCCGGAGCCTGCAAATATCCAAGTACATTGCAACCAGACACATTGCTCAAAATCAAGAAGTTTTCCTTTGAGTGTCATCACAGTAAGTGTTGTAGCCATCACACTCTCAATCATTGGTTTTGGATTGTTTAAACTCGTCAGATATCGCCGTCGAAAGCAGAGAATTACATCAAACTCTTCTGAAGGGAAATTTAGTCCTCAGCAGCCTAAAGAGTTATACAGAAAAAGCCCATCAACATTTGTTAATCTTGACTATTATAATGGTTGTTATCCATTGCCTAATGATCAAAATGCAGATGGATTAGCCAATGAATATCTAAACCAATTTAGGTTCAATGTAGATGAAGTCGAATCTGCGACGCAGTATTTTTCGGAAGCCAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAACATGACATGCTGCAAAACCGAGGAAGCCGAATTTGCAAAGGGATTGAGCTTATTAACCTCATTGAGACATGAAAATGTTGTTAGATTAAGAGGTTTTTGTTGCTCAAGTAGTAGAGGTGAATGTTACCTTATCTATGACTTTGCCCCAATGGGTAATTTGTCTCAATATCTTGACATAGAAGATACAAGTGGCCATGTGCTTGATTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAAGGGATAGGATATCTACACAGCAATGAAGGAAGCAAACCTACAATAGTACACCAGAATATTTCAGTAGAGAATGTTCACCTAGACAAAGAGTTTAATCCATTGATCATGGAAGCTGGACTTCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCTATGGGGTACCTAGCTCCCGAATACATAACTACAGGGCGCTTTACTGAGAAGAGCGATATATACGCGTTCGGGGTTATAGTACTTCAAGTTCTATCAGGCAAGAAAGCAATAGGTGGTTCAATAAGGATAGCATTTGAGTCTTTCAAATTTGATGATTGCATTGACACAGATCTTAGAGGAAGATGTTCGATATCTGAAGCAACGATTCTTACAAAGCTTGCAATGCAGTGTATCCATGAGAGCCCCGACGAAAGACCGAGCACGGTGGATGTGATTCAGGAGCTAACTGTATTTCCTGCTCATTCATAA 2049 0.3958 MNSIHLILSLFLLFTFSTQQTVNGNAELRALMDLKSSLDPEGKILTSWISDGDPCSGSFEGIACNEHWKVANISLQGKGLSGWISPAVSELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNSLSGTIPHEVGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGQIPLSLGNLENLSRLNLSFNNFTGSIPATLATIAHLEVLDIQNNSLSGIVPSALKRLGEGFQGRNNPGLCGVGLSNSRACENDPDLNASDVGTTDQDHLKNINNTATPRPEPANIQVHCNQTHCSKSRSFPLSVITVSVVAITLSIIGFGLFKLVRYRRRKQRITSNSSEGKFSPQQPKELYRKSPSTFVNLDYYNGCYPLPNDQNADGLANEYLNQFRFNVDEVESATQYFSEANLLCKSKFSAMYKGVLRDGSLVAIRSINMTCCKTEEAEFAKGLSLLTSLRHENVVRLRGFCCSSSRGECYLIYDFAPMGNLSQYLDIEDTSGHVLDWSKRVSIIKGIAKGIGYLHSNEGSKPTIVHQNISVENVHLDKEFNPLIMEAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKKAIGGSIRIAFESFKFDDCIDTDLRGRCSISEATILTKLAMQCIHESPDERPSTVDVIQELTVFPAHS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00277 682 Gene3D Transferase(Phosphotransferase) domain 1 490 678 - -
Car08g00277 682 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Car08g00277 682 SUPERFAMILY L domain-like 27 234 - -
Car08g00277 682 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Car08g00277 682 ProSiteProfiles Protein kinase domain profile. 410 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00277 682 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 676 - -
Car08g00277 682 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 676 - -
Car08g00277 682 Gene3D Phosphorylase Kinase; domain 1 381 488 - -
Car08g00277 682 SUPERFAMILY Protein kinase-like (PK-like) 388 677 IPR011009 -
Car08g00277 682 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515
Car08g00277 682 Pfam Protein tyrosine and serine/threonine kinase 415 675 IPR001245 GO:0004672|GO:0006468
Car08g00277 682 Gene3D Ribonuclease Inhibitor 175 244 IPR032675 -
Car08g00277 682 SMART LRR_typ_2 211 234 IPR003591 -
Car08g00277 682 SMART LRR_typ_2 187 210 IPR003591 -
Car08g00277 682 SMART LRR_typ_2 139 163 IPR003591 -
Car08g00277 682 SMART LRR_typ_2 91 115 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00277 Car-Chr8 2199181 2202629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00277 3 523 Miscellaneous Gene Families AT4G22730 55.307 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Car08g00277 PK_Tyr_Ser-Thr 8.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00277 - - mtr:MTR_5g011840 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00277 08 2199181 2202629 Car08g00277 08 2199181 2202629 ECH