Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00242 ATGGATGATATTTTCATGTCATCACTGAACTATGCCACTCAACAACACTTAAATATAtcatcgtcttcttcttcttcttcctctacttcCGAAACAACAAGTTATTCTACAAACCGAACAACTAGTAATGAAGAAGTGATATTAGCATCAACACGACCAAAGAAACGAGCAGGGAGAAAAGTGTTCAAGGAGACAAGACATCCTGTTTACAGAGGAGTAAGAGCAAGGGACAATAACAAATGGGTTTGTGAGATGCGTGTTCCTAATAATAACAAATCAAGGATTTGGCTTGGAACATATCCAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTCACTCTTCGTGGGCAATCAGCTTGTCTTAATTTTGCTGACTCAGCATGGCGGTTGAGGTTGCCGGAAACTACTGACGCGGTGGAGATAAGAAGAGCGGCGATGGAAGCTGCTCAGTTGTTTGCGGTTGAAGACAGCCAATGTGAACAGCAGAGTGTTGGGGAAGAACAAGTGGTTCCGGTGGTGACGTCAGAATATGATGAAGAAATGAATGATTTGATTTTGAGTATTGCGAATGAGCCATTACGTTCTCCTCCTCCTTCTATGACAGATTATTATGGTGGTAATGATAATGTTGATATGTATGACACTCAAGTTTCGTTGTGGAACTTCTCTACTTGA 684 0.3991 MDDIFMSSLNYATQQHLNISSSSSSSSSTSETTSYSTNRTTSNEEVILASTRPKKRAGRKVFKETRHPVYRGVRARDNNKWVCEMRVPNNNKSRIWLGTYPTPEMAARAHDVAALTLRGQSACLNFADSAWRLRLPETTDAVEIRRAAMEAAQLFAVEDSQCEQQSVGEEQVVPVVTSEYDEEMNDLILSIANEPLRSPPPSMTDYYGGNDNVDMYDTQVSLWNFST 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00242 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 4 226 - -
Car08g00242 227 SUPERFAMILY DNA-binding domain 69 129 IPR016177 GO:0003677
Car08g00242 227 Gene3D AP2/ERF domain 69 128 IPR036955 GO:0003700|GO:0006355
Car08g00242 227 Pfam AP2 domain 68 119 IPR001471 GO:0003700|GO:0006355
Car08g00242 227 CDD AP2 70 129 IPR001471 GO:0003700|GO:0006355
Car08g00242 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 226 IPR045277 GO:0003700
Car08g00242 227 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Car08g00242 227 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Car08g00242 227 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Car08g00242 227 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Car08g00242 227 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00242 Car-Chr8 1954578 1955345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00242 43 225 AP2-EREBP Transcription Factor Family AT1G63030 51.053 6.67e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g00242 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00242 - - mtr:MTR_5g010940 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00242 08 1954578 1955345 Car08g00242 08 1954578 1955345 ECH
Car07g01173 07 10523683 10524535 Car08g00242 08 1954578 1955345 PCT