Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00241 ATGAGTAACCGTGGAActtcttcttgttcttcttcttcAGAACCAAGTTGTATTACAACCACTGATGATAAGAAACAAGTTAAATATCACTCGGACGAAGAAGTTATATTAGCAACAACACGACCAAAGAAGCGATCAGGTCGAAGAGTGTTCAGAGAAACAAGACACCCTGTTTACAGAGGAGTCAGAGCAAGGGACAACAACAAATGGGTTTGTGAGATGCGTGTTCCAAACACCATTAACTCTAAGATTTGGCTTGGAACATATCCAACGCCTCAAATGGCTGCACGTGCACACGACCTTGCCTCACTCACTCTTCGTGGAACATCAGCTTGTCTCAACTTTGCTGACTCAGCATGGCGGTTAACGTTGCCTGAATCGACAGATGCAGTGGAGATAAGAAAAGCGGCTATGAAAGCTGCTGAATTAATTGCAGCTGAAGATGAAATTAACAAGCAGCGTGATCAACAGTGTGTTAATGAAGATCCCAGCAACTATGAAGGTACTAGCACTATGAATGTTGAACAATTAGTTTCCACATCAGAAACTGAAGAAATGCATGATTTGATTTTGAACATTGCCAATGAGCCTTTAATGTCTCCTCCTATGTCACCTCCTCATTCCACCAGAGATTATGCAAGCGATTATTTGGCTGACATGGACATTTTTGATACTCAGGTTAATCAAACAAGAATGGGAAAAGGCCATAAGGGGACAACAATAATTGTCCCATTTACCATGACTAAACAACACGCTAATTGGTCTCCATATGACAACAATGGAGGATCTTGTGTTGCAATTGCCGGATCGGATTACTGTGTTATCGCAGCAGATACGAGGATGTCCACCGGTTACAACATCCTCACTCGCGACTACTCCAAAATTTCTCATCTAGCTGAGAAATGTGTGATGGCTTCTTCTGGTTTTCAAGCTGATGTGAAGGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGACATATCAGCATCAACACAACAAGCAAATGAGCTGCCCTGCAATGGCTCAGTTGCTTTCAAACACACTTTATTACAAACGCTTCTTTCCTTATTATTCCTTCAATGTGTTGGGCGGCCTTGACAGCGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCCTATGAGAGGGTGGGATATAGCTCTCAGGGCTCTGGATCCACACTCATTATGCCTTTTCTTGATAACCAACTGAAGTCCCCTAGCCCACTCCTCTTACCAGCCCAGGATGCTGTTACTCCACTGTCTGAAACAGAAGCAGTTGATCTGGTGAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACTGGGGATAAGGTTGAAATTGTCATCCTAAATGCCAGTGGTATTCACCGTGAATTCATGGATCTAAGGAAAGACTGA 1410 0.4227 MSNRGTSSCSSSSEPSCITTTDDKKQVKYHSDEEVILATTRPKKRSGRRVFRETRHPVYRGVRARDNNKWVCEMRVPNTINSKIWLGTYPTPQMAARAHDLASLTLRGTSACLNFADSAWRLTLPESTDAVEIRKAAMKAAELIAAEDEINKQRDQQCVNEDPSNYEGTSTMNVEQLVSTSETEEMHDLILNIANEPLMSPPMSPPHSTRDYASDYLADMDIFDTQVNQTRMGKGHKGTTIIVPFTMTKQHANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSETEAVDLVKTVFASATERDIYTGDKVEIVILNASGIHREFMDLRKD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00241 469 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 250 469 - -
Car08g00241 469 Pfam AP2 domain 57 108 IPR001471 GO:0003700|GO:0006355
Car08g00241 469 MobiDBLite consensus disorder prediction 1 20 - -
Car08g00241 469 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Car08g00241 469 Pfam Proteasome subunit 259 453 IPR001353 GO:0005839|GO:0051603
Car08g00241 469 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Car08g00241 469 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Car08g00241 469 CDD AP2 59 118 IPR001471 GO:0003700|GO:0006355
Car08g00241 469 MobiDBLite consensus disorder prediction 1 24 - -
Car08g00241 469 ProSiteProfiles Proteasome beta-type subunit profile. 261 454 IPR023333 -
Car08g00241 469 PANTHER PROTEASOME SUBUNIT BETA 250 469 - -
Car08g00241 469 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 254 469 IPR029055 -
Car08g00241 469 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Car08g00241 469 ProSitePatterns Proteasome beta-type subunits signature. 265 312 IPR016050 GO:0005839|GO:0051603
Car08g00241 469 SUPERFAMILY DNA-binding domain 58 118 IPR016177 GO:0003677
Car08g00241 469 CDD proteasome_beta_type_1 254 469 - -
Car08g00241 469 Gene3D AP2/ERF domain 58 117 IPR036955 GO:0003700|GO:0006355
Car08g00241 469 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 255 468 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00241 Car-Chr8 1923885 1929963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00241 31 204 AP2-EREBP Transcription Factor Family AT1G12610 50.829 7.13e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g00241 Proteasome 7.3e-34 CL0052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00241 K02732 - cam:101505186 456.062