Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00236 ATGGGCGGCGAGAAGAGTGAAAATAGTCCGTTTCATTTTCTGGTGAATCGATGTCGGAGCTTGGAGGAGAAACAAGCCAAGCTGGAGAAGCAGTTTGATGAATTGCTGCAGGAGAAAAGGCGCGCGGTCAAAGACAATGACGAAATCATTGCAGATTCAACAGATGGTGAATTCCTTTCTGGTTTCTTCTTCTCTCTAAGTCCTTATGCAAGCATTTTGAAATGCATGGGACACGCCGTTTATGTCCAGAGAGTTTCCTCCGGCGAGATTATTTACTGGAATGATTCAGCGGAAACTCTGTATGGATGGAAGGACTATGAAATCATTGGACAAAGAGTAGCTGATTTCCTAGTTTCTGAGGAATATTATGGGCCTCTACGGAAAATTCTAGAACGGGTGATTACAGGAGTGCCATGGTCTGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAATAATGATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATCAGTGTTTCTAGTGATGGAGCTGTATTTAACTCTAATAAGGATTTCAACAAACGAAGAGCTTGCCAATCTCGCGGGAATGGCCAACCTGGAGCACAAAGATTCAAAAGGATTCAGTGGCCTCCACGCCCGTTGATTGCACCAGTGCCGCAGATTGCATCATCCGTTTCCAATCTGGAAACCAAATGTCATTCCCGAAGTCATCATAAAGAAAACACAACTGTCCAAGACACCAGCAAGAAGGATGAGTCTACTAATGAATTTAGCCAACCTTCTAAAATTGCAGCTAAAGTCCTTGCTAAGCTTCAAATCGGGGGAAGTGGAAAATGTAGGAGGAATACTAGTAGTATTAATGATAATTCAAGAAGTTATAGAGTGAATAATGAAAATGGTTTATCTGGAGGTTCAGTTGCATTAACTTCGCACCAGGACAATTCAAAtggagcagataaagatgaaaatctccaacaatACCCTTTTTTCAAGATTAGGCTGACATTGGAGCCAGAAGCTACAAATATGGTGCTAGAAGATGAAGTGCAAATGCGGCAAGAAGGGTTGCCATTGCCATGCTCGAAGGAGAGTATAGTTGTTAGCCGTGAGAGTTCATCAAGAAAAGGGAATAGTGAATCAAACTCTATTGCAGGGTGCGGAATCCATTGGGAAGACCTTCAATTAAGAGAGGAGATTGGGAAAGGTTCGTGTGCTGTTGTTTATCATGGAATTTGGAATGCATCGGATGTTGCCATCAAGCTGTACTTTGGGAATGGATACACAGAGGAGACTTTACGAGACTACAAAAAAGAGATTGATATAATGAAAAGATTGAGACACCCTCATGTATTGCTTTTCATGGGAGCAATATATTCACAGGAAAAGCTTGCCATTGTGACAGAGTTATTGCCTAGGGGAAGCCTTTTCAAAACACTTCACAAGAACAATAAAAAATTAGACATCAGAAGGCGTCTTAAAATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATAGAGACCTAAAGTCTTCCAACCTGCTAGTTGATAAAAATTGGACTGTCAAGGTTGGAGACTTTGGCCTCTCGAGGTTGAAGGATGCAACTTTACTGACTACCAAATCCGGGAGAGGCACTCCTCAATGGATGGCCCCTGAAGTCCTCCGCAATGAACCTTCAAATGAAAAGTCTGATGTGTTCAGTTATGGTGTCGTCCTTTGGGAAATAATGACTCAATCTATTCCATGGGAAAATTTGAATTTCTTACAGGTTGTTGGAGTAGTAGGCTTTATGGATAGAAGACTGGACCTGCCTGATGAGCTTGATCCCCATGTAGCATCAATCATAAATGGCTGCTGGCAAAGTGATCCAGAACAACGTCCGTCGTTTGAAGAGCTAATACAGAGAATGATGTTGGTTCTCAACAGAGTAACAACTATGCCATTAAAGAGAATTGCAGAATCCTGA 1998 0.4139 MGGEKSENSPFHFLVNRCRSLEEKQAKLEKQFDELLQEKRRAVKDNDEIIADSTDGEFLSGFFFSLSPYASILKCMGHAVYVQRVSSGEIIYWNDSAETLYGWKDYEIIGQRVADFLVSEEYYGPLRKILERVITGVPWSGQFPFKKRSGEIMMAMVTKTPLYEDGELVGVISVSSDGAVFNSNKDFNKRRACQSRGNGQPGAQRFKRIQWPPRPLIAPVPQIASSVSNLETKCHSRSHHKENTTVQDTSKKDESTNEFSQPSKIAAKVLAKLQIGGSGKCRRNTSSINDNSRSYRVNNENGLSGGSVALTSHQDNSNGADKDENLQQYPFFKIRLTLEPEATNMVLEDEVQMRQEGLPLPCSKESIVVSRESSSRKGNSESNSIAGCGIHWEDLQLREEIGKGSCAVVYHGIWNASDVAIKLYFGNGYTEETLRDYKKEIDIMKRLRHPHVLLFMGAIYSQEKLAIVTELLPRGSLFKTLHKNNKKLDIRRRLKMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEVLRNEPSNEKSDVFSYGVVLWEIMTQSIPWENLNFLQVVGVVGFMDRRLDLPDELDPHVASIINGCWQSDPEQRPSFEELIQRMMLVLNRVTTMPLKRIAES 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00236 665 TIGRFAM sensory_box: PAS domain S-box protein 86 177 IPR000014 -
Car08g00236 665 MobiDBLite consensus disorder prediction 190 211 - -
Car08g00236 665 MobiDBLite consensus disorder prediction 233 258 - -
Car08g00236 665 SMART pas_2 67 135 IPR000014 -
Car08g00236 665 CDD STKc_MAP3K-like 401 647 - -
Car08g00236 665 MobiDBLite consensus disorder prediction 232 260 - -
Car08g00236 665 SMART serkin_6 395 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00236 665 PANTHER SERINE-THREONINE PROTEIN KINASE 14 238 - -
Car08g00236 665 PANTHER SERINE-THREONINE PROTEIN KINASE 243 649 - -
Car08g00236 665 MobiDBLite consensus disorder prediction 280 306 - -
Car08g00236 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Car08g00236 665 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 243 649 - -
Car08g00236 665 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 14 238 - -
Car08g00236 665 SUPERFAMILY PYP-like sensor domain (PAS domain) 69 177 IPR035965 -
Car08g00236 665 Coils Coil 11 45 - -
Car08g00236 665 SUPERFAMILY Protein kinase-like (PK-like) 388 656 IPR011009 -
Car08g00236 665 ProSiteProfiles PAS repeat profile. 87 137 IPR000014 -
Car08g00236 665 Gene3D PAS domain 82 179 - -
Car08g00236 665 PRINTS Tyrosine kinase catalytic domain signature 469 482 IPR001245 GO:0004672|GO:0006468
Car08g00236 665 PRINTS Tyrosine kinase catalytic domain signature 508 526 IPR001245 GO:0004672|GO:0006468
Car08g00236 665 PRINTS Tyrosine kinase catalytic domain signature 555 565 IPR001245 GO:0004672|GO:0006468
Car08g00236 665 PRINTS Tyrosine kinase catalytic domain signature 574 596 IPR001245 GO:0004672|GO:0006468
Car08g00236 665 PRINTS Tyrosine kinase catalytic domain signature 618 640 IPR001245 GO:0004672|GO:0006468
Car08g00236 665 Gene3D Transferase(Phosphotransferase) domain 1 474 657 - -
Car08g00236 665 ProSiteProfiles Protein kinase domain profile. 395 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00236 665 CDD PAS 88 177 IPR000014 -
Car08g00236 665 Pfam Protein tyrosine and serine/threonine kinase 395 646 IPR001245 GO:0004672|GO:0006468
Car08g00236 665 Pfam PAS domain 86 177 IPR000014 -
Car08g00236 665 Gene3D Phosphorylase Kinase; domain 1 389 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00236 Car-Chr8 1879477 1885521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00236 1 653 MAP Kinase Kinase Kinase AT4G23050 44.837 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Car08g00236 PK_Tyr_Ser-Thr 5.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00236 - - mtr:MTR_5g010730 924.08