Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00235 ATGTCGACGACAAGGTCTCCGAGCCGTTCCTCAGAGGACATCGTCGATTCAACGCCGTTTATTGCAAATTCCGGCGGCTCCTCCGACGAAATCAACGCCGGTCGTCGATTTGCTCGTAGACAGAGGCTTCTTCAAGCGGCGAGGTTTCTCCGTCAAGCAAGCGGCCGTAGAATGATGCGCGAACCCTCTGTGGTTGTTCGAGAAGCTGCGGCGGAGCAATTGGAAGAAAGGCAAAGCGATTGGGCTTATTCGAAACCGGTTGTGATCCTCGACATCGTTTGGAACTTCGCTTTCGTCGTCGTGGCTGCAACCGTTTTGTTTTTGAGCCGAAGTGAAGTACCGGAAATGCCCCTGAGGTTGTGGATTGCGGGGTATGTTCTGCAATGTATTCTTCACATGGTGTGTGTTTGTTTTGAGTATAAGAGAAGGAGACGGTACCAGCGTTCTTCATCTTCCTACGCAGTAGCAGGTTCAGATAGGGTTGTTACTAGTAGTGGTAATTTGAGTTCAGCTTCAAGGGAAGTTTCTCGTTCTGCTTCTGGTTCAAGTCAGTATGTTTCATTGGCTCAATTTGATGAAGAGAGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTTAGCCCAAGACTCTCCCCAGCTTTACTGGTTATGTATAATCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTCGCCTGTATCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTTTATGCTGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCAAAGAGTTGAGAGTAATGATAAACAAACTGGTAATATTCAAGGACCTGTTGGAGGAATAATGACTGAATGCCGGGCTGATTCACCTATTGAACATGTTCTAGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTGTTCTTATGACGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAATATAACATCTTGAAAAGTAGTAACCTCGGTCAAGAGGAAGTGTAG 1182 0.4518 MSTTRSPSRSSEDIVDSTPFIANSGGSSDEINAGRRFARRQRLLQAARFLRQASGRRMMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLFLSRSEVPEMPLRLWIAGYVLQCILHMVCVCFEYKRRRRYQRSSSSYAVAGSDRVVTSSGNLSSASREVSRSASGSSQYVSLAQFDEESTSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRVESNDKQTGNIQGPVGGIMTECRADSPIEHVLAEEDAECCICLCSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLGQEEV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00235 393 CDD RING-H2_RNF111_like 337 381 - -
Car08g00235 393 ProSiteProfiles Zinc finger RING-type profile. 338 379 IPR001841 -
Car08g00235 393 PANTHER TARGET OF ERK KINASE MPK-1 5 393 - -
Car08g00235 393 SUPERFAMILY RING/U-box 328 385 - -
Car08g00235 393 MobiDBLite consensus disorder prediction 1 27 - -
Car08g00235 393 SMART ring_2 338 378 IPR001841 -
Car08g00235 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 391 IPR013083 -
Car08g00235 393 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 393 - -
Car08g00235 393 Pfam Ring finger domain 337 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00235 Car-Chr8 1871846 1877356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00235 1 386 C3H Transcription Factor Family AT1G68070 46.272 6.51e-116 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00235 - - gmx:100790497 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01162 07 10436349 10444647 Car08g00235 08 1871846 1877356 PCT