Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00234 ATGTTCGAAGTCAAAAATAAGCTCAATGATATTGAATTTGATTCACCTCATCGAGATTTGCTTCATCTATGTCTTTCTTCGCCTAATTGCAATAGCAACACTTGTCTTCTCGAAGCAACCTCTGTTACAGGGAGAATAAAAGCTCAAGTTAGTTCGACTAAGGGATGTTGGACAGAGGAAGAGGATAACCTTTTGATTGAGACGGTCAAGAAGCACGGTGGAAGCAACCGGAAAAATATAGGTGGATATGCTGAATACCTCCATGGGCAAACCGACAACCAATGCTTGCATCGCTGGCAAAAGGTTTCCAATCCAGATCTAGTAAAGAGATCATGGACAAAGGAGGAGGATGAGTCCCTAATTGAACTAGTAAGAAAGTATGGTTTCAAGAGATGGTCTTTTATTGCAAAGTTCATGCCCGATCGTGTTGGAAAGCAATGTCGAGAGAGGTGGCATAATCATCTTGATCCAGCTATAAAAAAGGATGCATGGACAGAGGAGGAAGAATCAAAACTTGCTCTCTTTCACCAAATATATGGAAGTAGATGGTCAGAAATTGCAAGGTTTCTTCCTGGAAGGAGTGACAATGCTATAAAAAATCATTGGAACTGCTCAATGAAGAAGAAGTCATCTACATCACCTATTAGGTGTGATGATAATGTTTCCACTACCAGTTATTGCTCTTCTGTAATAAAGCCAGCGCATGATTTGTTCAAAGCTGTGGATCAGAGTTCTCCCAAGCAAAGTCACTGGTTGAAGCACAATGCTGATAACTTTCCAACAAAAATGATTATTCAAAGTTCTTCCGTAGAGGAACTATGCTCTGAAAAAAACAGTTTTGGTTTGGCAACTCCTACTAGGGCCTCAGGACAAGGTGAAAGAAGATTGGTTAATTTACCAAATGAGACGGAAACAGTTAAACATATGAACTCTTTGGATAATTCGTTGGATATGCCCGCTACAAATATGGACTGTTTCTCTCTTGCCACTCAAGTTAAATCTCCCAAACGGCAAAAGGTTTCTTTTTCAGATTCAAAGTTTATTGCTAGTAATGAATCTGACAGTTTCCATTTGAGCTACTCAAAATTGGCTAGTCATGAAAAGAAAGGTCAAGTAGGAAGGGAAAACAGTAACAAAATCATCAGTGGGCCAGATAGAGCAGATGTCACAAGCAGTGAATATGATGACTACTTTGGTGTTCCCCCTTCATCTGTACCCAAGGTGAGCCCGGAATATGTACTAAGAAGCTTAGCAATGACCTATAAGAACATTCCTTCTATAATTAGGAAAAGAACTTCCAAGAAGGCATTTAGTGCTGCTAATTGTGGCAAGTCCCTAACACCTTCGAGAATTGTCGACTCAACTCATGAACACGTTAGGAAATTTCNNNNNNNNNNGAATAACGCACTCCATCTCTATCAAGGTGAATCAGcgacgacggactcacagagatcaattccgacgccgtttctgacaaaaacgtatcaactcGGATTTCGAAAAGTTGTACCTGACCGTTGGGAATTTGCGAATGACGGTTTCCGGCGAGGTGAGAAAAATCTACTTCGCGACATACAGCGGCGGAAAATATCACCGACGGCAGGAACGTCCATGGCGACGGCGGTAGCCGTGGCTAATACTGTAACGGTTGCTGTAGCGGCACCTGTTACTCCAACAACTTCCGGCGACGAACAGGTAGTTTCCTCGAACTCATCTCCGATTATGGCGCACAATAGTACTACAGTGCACCTTAGCACAAGTTGCACCACTGCGCCTGAGCTATTAGAAGAGAATGAAAGGCTTAGAAAAGAGAATATGCAACTGAGTAACGAGTTGAGTCAATTGAAAGGTCTTTGTAATAATATACTTTCTATGATGACAAATTATGCTTCTGGTTTTAGTCGTCAATTAGAATCTTCTACTAGTGCCGCAACGGCACGGGGTGTGATTGTAACAGAAGGAAAAGCGTTGGATCTTTTACCTGCGAGGAATGTTTTATCTGTTGGTGGTGGTGGTGCAACGACGGCGAATTTGGCGGAAACGGAGGTTCCTAAGCTGTTTGGGGTTTCAATTGGACTTAAAAGATTTAGGACTGAGAGTGAGGCTGAACCGGAGAGAGAGGAAAGGGAACATAATAAAATGCCGACGAAAGCACAATCCTCGCAGGAACGTGATCGAGAATCCGATGTGAAATCTGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGCTGGATGGTGATGACTCGGATGATCAAGAGCATCGTTGGCATTTGA 2289 0.4032 MFEVKNKLNDIEFDSPHRDLLHLCLSSPNCNSNTCLLEATSVTGRIKAQVSSTKGCWTEEEDNLLIETVKKHGGSNRKNIGGYAEYLHGQTDNQCLHRWQKVSNPDLVKRSWTKEEDESLIELVRKYGFKRWSFIAKFMPDRVGKQCRERWHNHLDPAIKKDAWTEEEESKLALFHQIYGSRWSEIARFLPGRSDNAIKNHWNCSMKKKSSTSPIRCDDNVSTTSYCSSVIKPAHDLFKAVDQSSPKQSHWLKHNADNFPTKMIIQSSSVEELCSEKNSFGLATPTRASGQGERRLVNLPNETETVKHMNSLDNSLDMPATNMDCFSLATQVKSPKRQKVSFSDSKFIASNESDSFHLSYSKLASHEKKGQVGRENSNKIISGPDRADVTSSEYDDYFGVPPSSVPKVSPEYVLRSLAMTYKNIPSIIRKRTSKKAFSAANCGKSLTPSRIVDSTHEHVRKFXXXXNNALHLYQGESATTDSQRSIPTPFLTKTYQLGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKISPTAGTSMATAVAVANTVTVAVAAPVTPTTSGDEQVVSSNSSPIMAHNSTTVHLSTSCTTAPELLEENERLRKENMQLSNELSQLKGLCNNILSMMTNYASGFSRQLESSTSAATARGVIVTEGKALDLLPARNVLSVGGGGATTANLAETEVPKLFGVSIGLKRFRTESEAEPEREEREHNKMPTKAQSSQERDRESDVKSEXXXXXXXXXXXXXXRWMVMTRMIKSIVGI 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00234 762 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Car08g00234 762 Pfam Myb-like DNA-binding domain 112 172 - -
Car08g00234 762 SUPERFAMILY Homeodomain-like 56 113 IPR009057 -
Car08g00234 762 MobiDBLite consensus disorder prediction 367 386 - -
Car08g00234 762 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Car08g00234 762 PANTHER TRANSCRIPTION REPRESSOR MYB5 52 263 - -
Car08g00234 762 Coils Coil 591 618 - -
Car08g00234 762 Gene3D - 162 225 - -
Car08g00234 762 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 102 IPR017930 -
Car08g00234 762 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Car08g00234 762 MobiDBLite consensus disorder prediction 698 739 - -
Car08g00234 762 SUPERFAMILY Homeodomain-like 106 202 IPR009057 -
Car08g00234 762 SMART hsfneu3 486 528 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00234 762 MobiDBLite consensus disorder prediction 698 732 - -
Car08g00234 762 CDD SANT 163 203 IPR001005 -
Car08g00234 762 CDD SANT 57 102 IPR001005 -
Car08g00234 762 ProSiteProfiles Myb-like domain profile. 49 103 IPR001005 -
Car08g00234 762 PANTHER MYB PROTEIN-RELATED 52 263 - -
Car08g00234 762 SMART sant 108 157 IPR001005 -
Car08g00234 762 SMART sant 53 105 IPR001005 -
Car08g00234 762 SMART sant 160 208 IPR001005 -
Car08g00234 762 CDD SANT 111 155 IPR001005 -
Car08g00234 762 Gene3D - 53 108 - -
Car08g00234 762 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Car08g00234 762 ProSiteProfiles Myb-like domain profile. 104 155 IPR001005 -
Car08g00234 762 Gene3D - 109 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00234 Car-Chr8 1862312 1868935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00234 52 209 MYB Transcription Factor Family AT5G11510 63.291 9.77e-63 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g00234 Myb_DNA-bind_6 7.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00234 - - cam:101501970 932.554