Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00228 ATGAACTTTTTTACTTCATTTTTGTTTCTCTGTTTGTTTTCCACCATCTCTCTAGTGGATTCTGTTACTCTACCCCCAAATGAAGTTTGGGCGCTTACAAGCTTCAAAGAATCTATCTATGAAGACCCTTATCTAGCTTTATCCAATTGGAATTCATTGGAATCAGATCTTTGTAATTGGGTTGGTGTCTCATGCACTATGGCACGAGATCATGTCATCAAACTAAACATGTCAGGTTCATCATTAAAAGGGTTTCTTGCAAGGGAGTTAGGGCTAATAACCTATTTGCAAGAACTAATTTTGCACGGTAACAATCTAATTGGAACGATACCGAAAGAATTGTGTGTGTTGAAATCTCTCAAGGTGTTGGATTTGGGAATGAATCAGTTAACAGGACCAATTCCTCAGGAGATTGGCAATTTAACCCAACTTGTGAACATAAACCTGCAGTCCAATGGGTTTGCCGGTAGGCTACCTCCTGTGCTTGGAAATTTGAGATACCTTCAAGAAATTCGGCTGGATAGAAATAGGCTTCAAGGACCCATTCCTGCGAGCGGCAGTTATAGTTTTGCTTCAAATATGCGTGGGATGTATGTGTCAAATGATAATGTAACTGGCTTCTGTCGTTCACCTCAGTTAAAAGTAGCAGACTTTTCATATAATTTTTTAGTTGGCAGCATACCAAAATGCTTGGAGTATCTTCCAAGGTCAAGCTTTCAAGGAAACTGCCTCCAGAGCAATGATCCAAAGCAGCGGCCTCCCGCACAATGCGCTGGTGCTTCAGCTGCCAGGAGTCAGCCAGTGATGAACAACCAATACCACCGACTAGATGATCGCCTACCCAAGCATCACCGAGCAACAGAACCTACATGGCTTTTGGCTCTAGAAATAGTATCAGGAACTATGGTCGGTTCTCTCTTTCTGGTCGCTCTTCTCGCTGCTTTCCAGAGATGCAACAACAAATCATCTATCATTATTCCTTGGAAAAAATCAGCCAGTCAGAAAGATCAGACTACAGTATATATAGACCCTGAGATGTTGAAAGACGTGAGAAGGTATAGCAGACAAGAGCTCGAAGAGGCTTGCGAAGACTTCAGCAATATAATTGGGTCCTCGCCGGACAGTGTGGTCTACAAGGGAACCATGAAAGGTGGGCCCGAGATTGCTGTAATTTCCCTCTGCATCAAGGAAGAGCATTGGACAGGATATCTGGAACTCTACTTTCAGAGAGAGGTGGCAGAATTGGCAAGGTTAAATCATGAGAATACTGGAAAACTACTGGGATATTGTAGAGAGAGCAATCCTTTTTCAAGGATGTTGGTTTTTGATTATGCTTCGAATGGGACACTTCACGACCACCTACATTGTTATGAAGAAGGATGCCAGTTCTCCTGGACAAGGCGTATGAAAATTGTCATTGGCATTGCACGTGGACTAAAGTACTTGCACACAGAAGTTGAACCTCCATTCACTATCTCAGAACTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGGTCTGCTCGCTAGTTAGTTTACTTCAAATCATAAAACTCGGCAATTATGATTTTGCTTGA 1587 0.4222 MNFFTSFLFLCLFSTISLVDSVTLPPNEVWALTSFKESIYEDPYLALSNWNSLESDLCNWVGVSCTMARDHVIKLNMSGSSLKGFLARELGLITYLQELILHGNNLIGTIPKELCVLKSLKVLDLGMNQLTGPIPQEIGNLTQLVNINLQSNGFAGRLPPVLGNLRYLQEIRLDRNRLQGPIPASGSYSFASNMRGMYVSNDNVTGFCRSPQLKVADFSYNFLVGSIPKCLEYLPRSSFQGNCLQSNDPKQRPPAQCAGASAARSQPVMNNQYHRLDDRLPKHHRATEPTWLLALEIVSGTMVGSLFLVALLAAFQRCNNKSSIIIPWKKSASQKDQTTVYIDPEMLKDVRRYSRQELEEACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVAELARLNHENTGKLLGYCRESNPFSRMLVFDYASNGTLHDHLHCYEEGCQFSWTRRMKIVIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKVCSLVSLLQIIKLGNYDFA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00228 528 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Car08g00228 528 Gene3D Phosphorylase Kinase; domain 1 335 444 - -
Car08g00228 528 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Car08g00228 528 MobiDBLite consensus disorder prediction 244 264 - -
Car08g00228 528 Gene3D Ribonuclease Inhibitor 25 282 IPR032675 -
Car08g00228 528 SUPERFAMILY L domain-like 26 235 - -
Car08g00228 528 SUPERFAMILY Protein kinase-like (PK-like) 341 511 IPR011009 -
Car08g00228 528 ProSiteProfiles Protein kinase domain profile. 363 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00228 528 Gene3D Transferase(Phosphotransferase) domain 1 445 521 - -
Car08g00228 528 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 520 - -
Car08g00228 528 Pfam Protein tyrosine and serine/threonine kinase 367 484 IPR001245 GO:0004672|GO:0006468
Car08g00228 528 PANTHER PROTEIN MALE DISCOVERER 2 7 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00228 Car-Chr8 1810926 1816125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00228 7 510 Receptor kinase-like Gene Family AT2G01210 27.338 1.48e-43 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Car08g00228 PK_Tyr_Ser-Thr 2.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00228 - - gmx:100794714 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00228 08 1810926 1816125 Car08g00228 08 1810926 1816125 ECH
Car08g00228 08 1810926 1816125 Car06g00540 06 5460135 5464738 PCT