Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00226 ATGGCGAAGCTATTATCCTTAGCTTGCTTTAGAAATGAAGGATGGCATAATCTCTCAGCTCGATCTCACTACCCGTCTATGCCTACCTTTCCTAAAGGCGAGACAGGAACGTCCTCCACCGCCGCGGAGCCTTCGGAGGTTACCGCACTTTTTTCAGTTCTCGGAATGACTTGCTCCGCCTGCGCCGGATCCGTCGAGAAAGGTATCAAGCGCCTCCATGGAATTCATGAAGCCGTCGTCGATGTCCTCAACAACCGTGCTCGCGTTATCTTTCATCCCTCTTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAAAATGCTGGATTTGAAGCGGCGATACTAACGGACGCGTCAAATGAAAATTCTATTCAAGTATGTCGCATACAAATAAAAGGAATGACTTGCACATCATGTTCAACCGCCGTTGAGTCAGCTCTAAAAGCCATCCCTGGCGTACAAAAAGCCCATGTAGCCTTAGCAACCGAAGAAGCCCAAGTCCACTACAACCCAAACATCGTAACTCATATCCATATCTTACAAGTCGTTGATGATGCTGGATTTGAACCCACACTTATTAGTTCAAGTGAAGACTTAAGCAAAATAGACCTCCACGTCGAAGGTCATGATCTCAACGATCATTCCATTCTTATACTCGTCGAAGATTCTCTTCGTTCACTCCCTGGTGTTTTGGAATTACACACCACTCTTGAATTCAACAAAATTTCACTTTCTTATAAACCCGATATTACAGGACCAAGGGACTTTATTAATGTCATCCAAGAAACAAGTTCTGGAAATTTGAAAGCAAAAATATTTCCTGGTGAAGGTGGAAGAAGAGATACTCATAGAAAACAAGAAATTAAAAAATATTACAAATCCTTTTTATGGAGTTTGGTTTTCACTATTCCAGTCTTTCTAACTTCCATGGTGTTTATGTATATACCTGGAATAAAAGATGCATTGGATTCTAAAATTGTGAATATGCTTACTGTTGGAGAGGTTATACGATGGGTGCTTTCAACACCGGTGCAATTCATTTTCGGGTGGCGATTTTATGTTGGTTTTTATAAATCATTGCGCCGTGGTTCTGCTAACATGGATGTTCTTATTGCTCTAGGAACAAATGCAGCTTATTTCTATTCTGTTTACTCTGTTTTGAGAGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTTTTTGAAACTAGTGCTATGCTTATTTCCTTTATTCTTCTTGGAAAGTATCTTGAGGTTTTAGCTAAAGGGAAGACATCGAATGCAATCGCGAAGCTCATGAATTTAACACCTGATACTGCTATTTTGTTGAGTTTGGATGGTGAAGGGAATGTTATTAGGGAGGAAGAAATTGATAGCAGGTTGGTTCAGAAGAATGATGTGATTAAAATTATTCCTGGTGCAAAAGTTGCTTCTGATGGGTTTGTTGTGTGGGGACAAAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCACGCCCTGTGTCTAAAAGGAAAGGTGATACTGTTATTGGTGGAACTGTGAATCAGAATGGAGTTTTGCATGTTAAGGCAACAAAGGTTGGATCAGAAAGCGCTCTTTCGCAGATTGTTCGACTTGTTGAGTCTGCACAACTGGCTAAAGCTCCTGTGCAGAAGTTTGCTGATCGCATTTCCACTTACTTTGTGCCTTTGGTGATCTTGATCTCATTGACAACATGGCTTTCTTGGTATTTAGCTGGAAGATTTCATACTTACCCGAAATCATGGATACCGTCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCAGTCATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACACCTACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTATTGATCAAAGGAGGGCAAGCATTGGAAAGTGCACATAAGGTGAACTGCATTGTTTTTGACAAAACTGGTACTCTCACTATTGGGAAGCCTGTGATAGTAAATACAAAACTATTGATAAATATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAACAGAGGTGAACAGTGAGCATCCATTGGCTAAGGCTGTTGTTGAGTATGCCAAGAAATTTAAAGATGAAGAGAACCCTTCTTGGCCAGAAGCACGAGATTTTGTTTCCATTACTGGACATGGGTCTATGAAAATTAGGAGCATCATGGTGACTGGGGACAATTGGGGAACTGCTAATTCCATTGCCAGGGAAGTTGGAATTGAAAGTGTTATTGCTGAGGCGAAACCCGAGCATAAAGCAGATCATGTGAAAAACTTACAGTCTTCTGGGTATACAGTGGCTATGGTAGGGGATGGCATCAATGATTCACCTGCACTTGTGGCAGCAGACGTGGGAATGGCAATAGGTGCTGGCACAGACATTGCTATTGAAGCAGCTGATATAGTCCTAATGAAGAGCAACTTAGAAGATGTCATAACTGCCATTGACCTTTCAAGAAAAACATTTTCACGCATACGCCTCAATTACGTTTGGGCTTTAGGTTATAATATGCTTGGCATTCCAATAGCAGCTGGAGTTATTTTCCCTTTTACAGGCTTTCGATTACCACCCTGGATTGCTGGAGCTGCTATGGCTGCCTCTTCTGTCAGTGTTGTTTGTTGTTCTCTGTTGTTGAAATATTACAAGAGACCCAAGAAGCTCAACAACCTTGACATACGTGCCATAAGGATCGATTCATCTAGTGATCCTTTGATCATACATGAAGATTAA 2775 0.4177 MAKLLSLACFRNEGWHNLSARSHYPSMPTFPKGETGTSSTAAEPSEVTALFSVLGMTCSACAGSVEKGIKRLHGIHEAVVDVLNNRARVIFHPSFVNEEAICEAIENAGFEAAILTDASNENSIQVCRIQIKGMTCTSCSTAVESALKAIPGVQKAHVALATEEAQVHYNPNIVTHIHILQVVDDAGFEPTLISSSEDLSKIDLHVEGHDLNDHSILILVEDSLRSLPGVLELHTTLEFNKISLSYKPDITGPRDFINVIQETSSGNLKAKIFPGEGGRRDTHRKQEIKKYYKSFLWSLVFTIPVFLTSMVFMYIPGIKDALDSKIVNMLTVGEVIRWVLSTPVQFIFGWRFYVGFYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLSLDGEGNVIREEEIDSRLVQKNDVIKIIPGAKVASDGFVVWGQSHVNESMITGEARPVSKRKGDTVIGGTVNQNGVLHVKATKVGSESALSQIVRLVESAQLAKAPVQKFADRISTYFVPLVILISLTTWLSWYLAGRFHTYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLINMVLREFYELVAATEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGSMKIRSIMVTGDNWGTANSIAREVGIESVIAEAKPEHKADHVKNLQSSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNMLGIPIAAGVIFPFTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNNLDIRAIRIDSSSDPLIIHED 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00226 924 PRINTS P-type cation-transporting ATPase superfamily signature 731 741 - -
Car08g00226 924 PRINTS P-type cation-transporting ATPase superfamily signature 807 819 - -
Car08g00226 924 PRINTS P-type cation-transporting ATPase superfamily signature 784 803 - -
Car08g00226 924 PRINTS P-type cation-transporting ATPase superfamily signature 490 504 - -
Car08g00226 924 CDD HMA 129 191 IPR006121 GO:0046872
Car08g00226 924 ProSitePatterns E1-E2 ATPases phosphorylation site. 656 662 IPR018303 -
Car08g00226 924 Pfam haloacid dehalogenase-like hydrolase 713 798 - -
Car08g00226 924 Gene3D - 45 115 - -
Car08g00226 924 Gene3D - 125 198 - -
Car08g00226 924 PANTHER ATP7, ISOFORM B 5 729 - -
Car08g00226 924 PANTHER ATP7, ISOFORM B 730 904 - -
Car08g00226 924 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 367 712 IPR027256 GO:0006812|GO:0016021|GO:0019829
Car08g00226 924 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 730 863 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00226 924 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 407 707 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car08g00226 924 Gene3D - 731 834 IPR023214 -
Car08g00226 924 Gene3D - 645 664 IPR023214 -
Car08g00226 924 Gene3D - 665 729 IPR023299 GO:0000166
Car08g00226 924 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 5 729 - -
Car08g00226 924 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 730 904 - -
Car08g00226 924 SUPERFAMILY HMA, heavy metal-associated domain 122 196 IPR036163 GO:0046872
Car08g00226 924 CDD HMA 51 113 IPR006121 GO:0046872
Car08g00226 924 Gene3D - 422 544 - -
Car08g00226 924 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Car08g00226 924 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 856 IPR023298 -
Car08g00226 924 SUPERFAMILY Calcium ATPase, transduction domain A 454 540 IPR008250 -
Car08g00226 924 CDD P-type_ATPase_Cu-like 293 894 - -
Car08g00226 924 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Car08g00226 924 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Car08g00226 924 Pfam E1-E2 ATPase 453 632 - -
Car08g00226 924 SUPERFAMILY HAD-like 653 890 IPR036412 -
Car08g00226 924 TIGRFAM TIGR00003: copper ion binding protein 129 189 IPR006122 GO:0005507
Car08g00226 924 TIGRFAM TIGR00003: copper ion binding protein 51 112 IPR006122 GO:0005507
Car08g00226 924 SUPERFAMILY HMA, heavy metal-associated domain 44 116 IPR036163 GO:0046872
Car08g00226 924 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Car08g00226 924 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Car08g00226 924 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Car08g00226 924 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Car08g00226 924 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Car08g00226 924 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872
Car08g00226 924 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00226 Car-Chr8 1791151 1797476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00226 664 913 Primary Pumps ATPases AT1G63440 68.898 6.94e-102 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00226 K17686 - ini:109175098 1191.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00226 08 1791151 1797476 Car08g00226 08 1791151 1797476 ECH