Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00224 ATGGATGGGAGAGAAGCTATGGCATTTTCTGACGGGTCTGGTTCATATTACATTCACAGAGGAGGAGAAGGGGTTGGTGGGTCTGGTAGTGGAGGAGTGTTCCAACAACCACCCTCTGGATTTAGAGTTTTGTCTAATGCTCATGGTGGTTCTGAAGGTTCTACATTTTCAATAGAGCCTCAACGTGGTAGTTTTAGTCATGGTGGTGTTATTAGCAATAGCATAGGTTCTTCTTCTGGTAATGTAGTAGTAGTGCCTTCTTCAAGGGAGCAGATTGTGAAAAAGAAAAGAGGGAGGCCGCGTAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTCTCTCCTGCCAATTCCACCCCTCCTTCAGATAAACGGCCTAGAGGGCGCCCGCCTGGAAGTGGAAGGAAGCAACAACTAGCTGCTCTAGGTGAATGGATGACCAGTTCTGCCGGTATGGCTTTTTCACCTCATGTTATCACCATTGGAGTTCAGGAGGACATTGTAGCAAGGTTATTGTCATTTTCACAACATAGACCACGCGCTTTATGCATCTTGTCGGGAACTGGGATTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACTAGTGTCGGTGTTACATTTGAGGGGCGATTCCAAATATTATGCTTATCTGGTTCTTACTTGGTTGCTGAAGATGGCGGACCTCGCAATAGGATGGGTGGCATTAGTGTTTCCCTTTCTAGTCCGGATGGTCATGTTATTGGTGGTGGTGTTGCTAGGCTTATTGCGGCAAGCCCTATCCAGGTGGTAGTTTGCAGTTTTGTATATGGGGGCTCTAAGCCAAAGACAACAACAAAACAAGGGACCACTACGAAAGATGACGGTGATTCAGAGCCTCAGAGTAGTGACAAGTTAGCTTCTCCGGACAGTGCACAACCAAACTACACAGTTTCTGCAACAGGCATGTGGTCCGGATCAAGGTCGGTAGACGTGCAAAGTGCACACCCACACACTGGTATTGACTTGATGCATGGGTGA 1020 0.4735 MDGREAMAFSDGSGSYYIHRGGEGVGGSGSGGVFQQPPSGFRVLSNAHGGSEGSTFSIEPQRGSFSHGGVISNSIGSSSGNVVVVPSSREQIVKKKRGRPRKYGPDVPVSLRLSPANSTPPSDKRPRGRPPGSGRKQQLAALGEWMTSSAGMAFSPHVITIGVQEDIVARLLSFSQHRPRALCILSGTGIVSSVTLRQPASTSVGVTFEGRFQILCLSGSYLVAEDGGPRNRMGGISVSLSSPDGHVIGGGVARLIAASPIQVVVCSFVYGGSKPKTTTKQGTTTKDDGDSEPQSSDKLASPDSAQPNYTVSATGMWSGSRSVDVQSAHPHTGIDLMHG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00224 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 339 IPR039605 GO:0003680
Car08g00224 339 MobiDBLite consensus disorder prediction 18 62 - -
Car08g00224 339 MobiDBLite consensus disorder prediction 295 309 - -
Car08g00224 339 PRINTS AT-hook-like domain signature 94 104 IPR017956 GO:0003677
Car08g00224 339 PRINTS AT-hook-like domain signature 122 133 IPR017956 GO:0003677
Car08g00224 339 CDD DUF296 156 268 IPR005175 -
Car08g00224 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 269 IPR005175 -
Car08g00224 339 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 339 - -
Car08g00224 339 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Car08g00224 339 MobiDBLite consensus disorder prediction 88 138 - -
Car08g00224 339 MobiDBLite consensus disorder prediction 276 309 - -
Car08g00224 339 MobiDBLite consensus disorder prediction 32 62 - -
Car08g00224 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 270 - -
Car08g00224 339 Gene3D - 156 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00224 Car-Chr8 1776355 1779795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00224 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.781 8.57e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00224 - - cam:101497147 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00224 08 1776355 1779795 Car08g00224 08 1776355 1779795 ECH
Car08g00224 08 1776355 1779795 Car06g00533 06 5426605 5429761 PCT