Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g00222 | ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGTGTGGTAGGGCCAAATTTGAGTGTTGCACCCCCTACTATACCTGCTGCACCTGTTTTTTACCCTACCGAAGATGAATTCAAAGATCCTTTGGACTTCATTCACAAGATTAGACCGGAAGCTGAGCCCTATGGAATTTGTAGGATTGTTCCTCCTAAAAATTGGAAACCTCCTTTTGCTTTGGATCTTGATTCTTTCACTTTCCCTNNNNNNNNNNAGCTTCAGGTTCGACCTGCTGCTTCTGATTCCAAGACTTTTGAGTTGGAATACTCTAGGTTTTTGAAGGATCACTGTAGTAAGAAGCTTAAGAAAAAGATTGTGTTTGAAGGTGAGGATTTGGATTTGTGTAAGCTTTTTAATGCTGTGAAACGGTTTGGCGGGTATGATAAGGTTGTTGATGGAAAGAAGTGGGGAGATGTTGCTAGGTTTGTGAAATTGAAATCTTCGGTTAAGATTTCTGATTGTGCTAAGCATGTGTTGTGTCAGTTGTATAGGGAGCATCTTTATGATTATGAGAAGTTTTGTAACCGGGTTAATCGAGGAAAGGGTGTGAGTTGTAAGAAAGGTGCGCAAGAGGATTGTAAGAATGATCACGGGGTAGAGAGTTCGCGTCTTGCAGATTGTTTGAAAGTTAAGGATCGAAAAGCGAGGGAAGAAGATCGTGGTCAGATTTGTGAACAATGTAAAAGTGGATTGCATGGGGAGGTAatgcttttgtgtgataggtgcgataaaggatggcatatttattgtctttcaccgccgttgaagcaaattcctctggggaactggtattgtttcaactgcTTGAGTTCTGATAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCATTACTCGTTGGAAACTTTTAAACGCATTGCGGACCGGTCGAGGAGGAGATGGTTTGGACAGGGACCGGTTTCGAGGGTTCAAATAGAGAAAAAATTCTGGGAGATTGTAGAGGGATCGATCGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGCAACTAATCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAACCCATGGAACCTGAATAACTTGCCCAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCATCATAATATTACTGGTGTTATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCGATGAATTACCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCACGCCAGGGCATTTGAGAAGGTGATGAGAAGCAGTCTTCCTGACCTGTTTGATGCACAACCTGATCTACTATTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGAAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTATCACGGTGGTTTCAATCTTGGTCTAAATTGTGCAGAGGCAGTCAATTTTGCCCCAGCTGACTGGCTACCATACGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGATAGCAGAGGGTCGTCTTATTTGAAAATGGAATTGTTGAGGATATCGGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAGTGGCATCGTTAAATCTTCTTGTTTAGCTCCTCGAAAATGTCCGCAATATGTAGGAACTGAAGAGGATCCAACATGCATTATTTGCCAGCAATATCTCTATCTATCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAACCAGCAAAACTTCGTCTTCTCTATCGTCATTCACTTGGTGTATTGTATGACTTGGCATTTTCTTTTGACAAATCTACTTCTGAAGACAAAGCTGAGAGTAGAAGTGTAAAAAGGCAGTCTTCATGTCTGAGTGCATTGACAAAAAAGGTGAAAGGTAGTTCCATTACTTTCACTCAACTTGCTACTGAGTGGCTTCTGCAATCTAGTACTATTCTTCAAAAAGATTTTGTGACTGATGCATTTGTCACGACCCTAAGGAAAGCTGAACAATTTCTTTGGGCTGGTCCCGAGATGGATTCTGTTCGGGATATGGTAACGAATTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGAGTGTGGGACAAAAGTTGAGTTATGGTTGTGTCATCAGGATTCAAGTTTAAAGAAAATTCATTTAGAATATGTTGATGAGTTACTGAGGTTTAACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAGTATGCAGAAGAAGCAAGATTGTTAATTCAGGAGATTGAGACTGCTTTGTCAATGTGTTCCAAGATGTCTGAGTTGCAGCTTTTATACTCTAGAGCGTGTGGCTTACCCATCTACATAAAAGAGACTAAAAAATTAGAAGGGAAAATTTCTTCAACGAAGGCATGGCTGGTTAGTGTTAGAAATTGCATCTCAGCTAAAGACCCTGCTGCATTAGACATTGAAGTTCTTTACAAGTTAAAATCAGAGATTGCAGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTGTCAGTGTCGTTATATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGCCTGCTGCTTCAGGAATGGGACAGTTTTACAGTTGACGTACCGGAATTGAGGCTACTAAGGAATTATCATTCAGATGCTGTTTCATGGGTTTCTGACTTTAATGATGCTTTAGGGAGAGTTCACAGACAGGAAGATCAACATAATGCAGTTGATGAATTGAAGAGCATTCTCGAAGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTACCTTTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGAGAGAAAGCTTCGAGGGCACGTGATTCTAAAATGCCCCTTGAATTCATCCAGCAACTGCTTAAGGAGGCTGCTATGCTAGGAATTGAGGGAGAGAAGCAATTCATCAATTTATCTTGTGTGGTTGGTGTTGCCATGCATTGGGAGGAAAGGGCTGGAGAAATTCTTTCACTTCAGGCTTCTATTTCTGACTTTGAGGACATGATAAGAGCTTCAGAAAATATATTTGTTGTTCTTGCTTCACTTAATGATGTCAAAGAAGCGTTATCAGAAGCTAATTCCTGGTTAAAGAATTCAAAGCCATATTTAGTCTCTTCTAATTGCATGTCAAATTCTGTGCGGAAAGTTGAGGACTTACAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAACGACACTTGAATTAGTTTTGAATAACTGCAAACAATGGGAGTGTGAAGCACAATCTCTACTTGATGATGCTCGGTGCTTATTTGAATTGGATTACACTGTCCATGGTATAAGTGGTGATTTAATGTTTAAAGTGGGAGATTTGATTGCAAGAATCCAGTCTGCCATAACATCTGGTGTATCTCTTGGCTTTGACTTCAGTGATATTTCAAAACTCCTAGAATCTTGTTCTACACTACAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAGAGAATGTTTTGGAGGTTGGGGAGGGCCTCTCTCATTCCTCTGCTTCTGGGATTCTATTGAAAGTATTGGTCAATGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATATCTAGACCTTGCAATTCTAGGAGATGCAAATTGACCGATGTTCAAGATATTCTTACTGATTATCAGACTATTAAAATGAactttgcggcagtaaattgtcaacttgaagaagccattggaaaacataaGTCATGGAAAGAGCAAGTGCATCAATTTTTTAGTCTAAGTTCTAGAGAACGAACCTGGTCATCAATGTTGCAGCTCAAGGAACTTGGAGATACAATTGCCTTTAGTTGCTCAGAACTGGATGTGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAGAGATGCATGGATAATATTGGAACTTCTTTCCGAAATGAAAATACGCTACTTCTTGCCCTACAGAAGATTGAACAGACTCTAGATAGATCACTGTACATATATGGCAATCTGCAAAATCAGAAGGAACCAAACCTATGTAACTGCTGCTTTGTTGATTCTGAGGATCAAGAATATCTTACTTGTTCCACTTGTATGCACTGCTATCACTTGCGGTGCATTGGACTAACATCAAAAGACACTGGCCTCTGTGACTATAAGTGCCCTTACTGTGAAATTTTGAAGGGTAAATCCCAGTATTCGAATGGAAGTCACCTCCTGAGGTTTGAAAAGCATATTGACTTGAACAATCTTGTCGAACTTCTGTCTGATGCTGAACATTTCTGTCTGTGGATTGACGAAAGAGAACTTCTGAACCAACTTGTCGAGAAAGCCTTTGCATGTAAATCTGGCTTGAGAGAAATAGTGAACCTTTCATCAGCTTATGTCAATGAAGATATTACCGTCATCTCTCAAAAATTAACCATTGCTATAAAGGCTAGCAAAGTGGGTGGTGTCTATGATGAGAGTGATAATTGTGACCTTGAGCTGGCTTTAGCAAAATTCTTGTGGAAAGTTCAAGTCAATATATTGTTAAATGGTGTACAGAAGCCAACTATTGAACAGATTCAGAAGCATCTGAAAGAGGGAATGTCTATGGAAATATCACCCGAAGATCACTATATGCTGAAACTTACAAATGTGAGTTGCTTGGGCTTGCATTGGGCAGAACTAGCCAAAAAGGTATCAAATGATTCTGGAGCACTCAGCCTGGATAAAGTATATGAACTTGTAGCGGAAGGTGAAAACTTGCCTGTTGACGCAAATGAGGAACTCAGGATGTTAAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCTGGAAGGATGATTGCTTGTTATCATTGTAGTGAGTGGTATCACTTTGATTGTATGAAATTACGATGCACGCGAGAGATCTACATTTGCCCTGCATGTAACCCGTGTACAGGATTCCCTACTAACCATGACAGATTAACTTGTCGTAAATTTGAGGAGCCTAAAACCCCTTCTCCCAGGCATACTAACCCTAGAAAGAAACAGAAGAGAGATGTACCCAGTCACACTTGCAAGATGTTTGCACCTAGGAATGACGATGGTAGTAATTTTAGATATTCGAATGGGACAGAATGTCTAAGGTGGAAAAATCAAAAGGCGATTAGAAGAGCAACTAAGAGACGTGTTGAACTTCAAAGTCTTTCTCCATTACTATGCATAAAACGGTAA | 5472 | 0.3927 | MGKGKPRAVEKGVVGPNLSVAPPTIPAAPVFYPTEDEFKDPLDFIHKIRPEAEPYGICRIVPPKNWKPPFALDLDSFTFPXXXXLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVKLKSSVKISDCAKHVLCQLYREHLYDYEKFCNRVNRGKGVSCKKGAQEDCKNDHGVESSRLADCLKVKDRKAREEDRGQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKHYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSIGEVEVMYGNDLDTSLYGSGFPNATNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSHARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENEVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKMELLRISDREKSWREKLWKSGIVKSSCLAPRKCPQYVGTEEDPTCIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKPAKLRLLYRHSLGVLYDLAFSFDKSTSEDKAESRSVKRQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQKDFVTDAFVTTLRKAEQFLWAGPEMDSVRDMVTNLTEAQKWAEGIKECGTKVELWLCHQDSSLKKIHLEYVDELLRFNPVPCNEPHYHKLKEYAEEARLLIQEIETALSMCSKMSELQLLYSRACGLPIYIKETKKLEGKISSTKAWLVSVRNCISAKDPAALDIEVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSCQCRYMLEGPMNLKNVGLLLQEWDSFTVDVPELRLLRNYHSDAVSWVSDFNDALGRVHRQEDQHNAVDELKSILEEGLSLKIQVDELPLVEIELKKANCREKASRARDSKMPLEFIQQLLKEAAMLGIEGEKQFINLSCVVGVAMHWEERAGEILSLQASISDFEDMIRASENIFVVLASLNDVKEALSEANSWLKNSKPYLVSSNCMSNSVRKVEDLQLLVSQSKHLKVSLEERTTLELVLNNCKQWECEAQSLLDDARCLFELDYTVHGISGDLMFKVGDLIARIQSAITSGVSLGFDFSDISKLLESCSTLQWCKRALCFCNHSPSLENVLEVGEGLSHSSASGILLKVLVNGVEWLRRALEGISRPCNSRRCKLTDVQDILTDYQTIKMNFAAVNCQLEEAIGKHKSWKEQVHQFFSLSSRERTWSSMLQLKELGDTIAFSCSELDVILSEVEKVENWKKRCMDNIGTSFRNENTLLLALQKIEQTLDRSLYIYGNLQNQKEPNLCNCCFVDSEDQEYLTCSTCMHCYHLRCIGLTSKDTGLCDYKCPYCEILKGKSQYSNGSHLLRFEKHIDLNNLVELLSDAEHFCLWIDERELLNQLVEKAFACKSGLREIVNLSSAYVNEDITVISQKLTIAIKASKVGGVYDESDNCDLELALAKFLWKVQVNILLNGVQKPTIEQIQKHLKEGMSMEISPEDHYMLKLTNVSCLGLHWAELAKKVSNDSGALSLDKVYELVAEGENLPVDANEELRMLRARCMLYCICRKPFDPGRMIACYHCSEWYHFDCMKLRCTREIYICPACNPCTGFPTNHDRLTCRKFEEPKTPSPRHTNPRKKQKRDVPSHTCKMFAPRNDDGSNFRYSNGTECLRWKNQKAIRRATKRRVELQSLSPLLCIKR | 1823 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g00222 | 1823 | MobiDBLite | consensus disorder prediction | 1746 | 1765 | - | - | |
| Car08g00222 | 1823 | Pfam | jmjN domain | 29 | 62 | IPR003349 | - | |
| Car08g00222 | 1823 | Pfam | PHD-finger | 235 | 282 | IPR019787 | - | |
| Car08g00222 | 1823 | CDD | ARID | 93 | 183 | - | - | |
| Car08g00222 | 1823 | ProSitePatterns | Zinc finger PHD-type signature. | 1688 | 1728 | IPR019786 | - | |
| Car08g00222 | 1823 | Pfam | PLU-1-like protein | 970 | 1170 | IPR013637 | - | |
| Car08g00222 | 1823 | Pfam | PLU-1-like protein | 881 | 973 | IPR013637 | - | |
| Car08g00222 | 1823 | Pfam | PLU-1-like protein | 1132 | 1387 | IPR013637 | - | |
| Car08g00222 | 1823 | Pfam | JmjC domain, hydroxylase | 406 | 522 | IPR003347 | - | |
| Car08g00222 | 1823 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1421 | 1492 | IPR013083 | - | |
| Car08g00222 | 1823 | SMART | cupin_9 | 373 | 539 | IPR003347 | - | |
| Car08g00222 | 1823 | CDD | PHD_RSF1 | 236 | 280 | - | - | |
| Car08g00222 | 1823 | ProSitePatterns | Zinc finger PHD-type signature. | 236 | 280 | IPR019786 | - | |
| Car08g00222 | 1823 | ProSiteProfiles | JmjN domain profile. | 28 | 69 | IPR003349 | - | |
| Car08g00222 | 1823 | Coils | Coil | 1160 | 1180 | - | - | |
| Car08g00222 | 1823 | ProSiteProfiles | ARID domain profile. | 91 | 187 | IPR001606 | GO:0003677 | |
| Car08g00222 | 1823 | SUPERFAMILY | FYVE/PHD zinc finger | 1428 | 1478 | IPR011011 | - | |
| Car08g00222 | 1823 | Gene3D | Cupin | 28 | 524 | - | - | |
| Car08g00222 | 1823 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 26 | 989 | - | - | |
| Car08g00222 | 1823 | SMART | bright_3 | 92 | 188 | IPR001606 | GO:0003677 | |
| Car08g00222 | 1823 | Gene3D | - | 84 | 184 | IPR036431 | GO:0003677 | |
| Car08g00222 | 1823 | SUPERFAMILY | ARID-like | 84 | 193 | IPR036431 | GO:0003677 | |
| Car08g00222 | 1823 | Coils | Coil | 813 | 833 | - | - | |
| Car08g00222 | 1823 | ProSiteProfiles | JmjC domain profile. | 373 | 539 | IPR003347 | - | |
| Car08g00222 | 1823 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1672 | 1730 | IPR013083 | - | |
| Car08g00222 | 1823 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 283 | IPR013083 | - | |
| Car08g00222 | 1823 | SMART | PHD_3 | 1431 | 1477 | IPR001965 | - | |
| Car08g00222 | 1823 | SMART | PHD_3 | 235 | 281 | IPR001965 | - | |
| Car08g00222 | 1823 | SMART | PHD_3 | 1687 | 1729 | IPR001965 | - | |
| Car08g00222 | 1823 | SUPERFAMILY | FYVE/PHD zinc finger | 229 | 283 | IPR011011 | - | |
| Car08g00222 | 1823 | ProSiteProfiles | Zinc finger RING-type profile. | 1432 | 1477 | IPR001841 | - | |
| Car08g00222 | 1823 | SUPERFAMILY | Clavaminate synthase-like | 328 | 554 | - | - | |
| Car08g00222 | 1823 | SMART | JmjN_1 | 27 | 68 | IPR003349 | - | |
| Car08g00222 | 1823 | SUPERFAMILY | FYVE/PHD zinc finger | 1678 | 1733 | IPR011011 | - | |
| Car08g00222 | 1823 | Pfam | ARID/BRIGHT DNA binding domain | 97 | 183 | IPR001606 | GO:0003677 | |
| Car08g00222 | 1823 | Pfam | C5HC2 zinc finger | 616 | 666 | IPR004198 | - | |
| Car08g00222 | 1823 | ProSiteProfiles | Zinc finger PHD-type profile. | 233 | 283 | IPR019787 | - | |
| Car08g00222 | 1823 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE LID | 26 | 989 | - | - | |
| Car08g00222 | 1823 | SMART | ARID_2 | 91 | 183 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car08g00222 | Car-Chr8 | 1739333 | 1764521 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car08g00222 | 37 | 72 | JUMONJI Transcription Factor Family | AT4G20400 | 61.111 | 1.46e-07 | 54.7 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | ARID | Car08g00222 | PLU-1 | 2.2e-15 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g00222 | K11446 | - | gmx:100789512 | 2963.33 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car08g00222 | 08 | 1739333 | 1764521 | Car08g00222 | 08 | 1739333 | 1764521 | ECH | |
| Car07g01122 | 07 | 10023485 | 10031929 | Car08g00222 | 08 | 1739333 | 1764521 | PCT |