Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00217 ATGGAGAGGGAAGAAGATGTGAAAATTGGAGCAAACAAATTCTCAGAAAAGAGTGCATTAGGCATAGGAGCTAAAAGTGACAGCAAAGACTACAAAGAAGCACCAGCAGCACCATTGTTTGAGCCAGGGGAGTTGAAGTCATGGTCTTTCTATAGAGCTGGAATTGCTGAGTTTGTTGCCACATTCTTGTTTCTTTACATCAGTGTTTTAACTGTGATGGGTGTTAACAGGTCAACTTCTAAGTGTGCCTCTGTTGGTATTCAAGGTATTGCTTGGGCTTTTGGTGGTATGATCTTTGCCCTTGTTTACTGCACTGCTGGAATTTCAGGTGGGCACATAAATCCAGCTGTGACCTTTGGTCTATTTTTGGCTAGGAAACTGTCCTTAACAAGGGCAGTATTCTACATAATAATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTGGTGAAGGGTTTTGAAGGTAATGCACGTTATGAGATGTACAAAGGTGGAGCAAATGTTGTGAATCCTGGATACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACTGTCTTCTCCGCCACCGATGCCAAAAGAAACGCCAGAGACTCTCACGTTCCGATTTTGGCCCCACTTCCAATTGGGTTTGCAGTGTTCTTGGTTCACTTGGCAACTATTCCCATAACAGGAACAGGCATTAACCCAGCAAGGAGTCTTGGTGCTGCCATAATATACAACAGAGAGCATGCTTGGGATGACCAGTGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCACTTGCTGCTTTATATCACCAGATTATCATACGAGCTATTCCTTTCAAGGCAAGGGGTTAA 864 0.4433 MEREEDVKIGANKFSEKSALGIGAKSDSKDYKEAPAAPLFEPGELKSWSFYRAGIAEFVATFLFLYISVLTVMGVNRSTSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEGNARYEMYKGGANVVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNREHAWDDQWIFWVGPFIGAALAALYHQIIIRAIPFKARG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00217 287 TIGRFAM MIP: MIP family channel proteins 56 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Car08g00217 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Car08g00217 287 PANTHER AQUAPORIN PIP1-2-RELATED 3 286 - -
Car08g00217 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 286 IPR034294 -
Car08g00217 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00217 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00217 Car-Chr8 1714206 1716736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00217 3 286 Major Intrinsic Protein MIP AT4G23400 84.155 1.65e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00217 K09872 - gmx:100796833 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00217 08 1714206 1716736 Car08g00217 08 1714206 1716736 ECH