Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00215 ATGTCTTCTGATATTGATATTTCTTACCCTTTCAATTTCATTGATGTTGTTCAAGAGGATTTCAACAATTCTCTCGACCctttttcctcttgtttcttttctttttcttcttcttcttcttcCCCAACCAACAACCATATACTACCCCTAACAAATTCCTCTGCTTTGGATGAGTCTAGAGTGAAAACAGAGGAATATTGCCAAATGAGTGTTGAAGATTACCCCAACAAACACCACTTTCTTTCTCACAGTTGTAGTGGTGATGAAACTGATCAAAGTGCTTCCAAGTTAATGCAAAGGAGGAGTTATAGCTGTAACAATTTTCATGACAAACCTGATTTTCCCTTTGAAGCTAATTACCATAACACCCTCATGGATTCCCCAGATTTTCAATGGCATGAATTCAACTCCCCTGAAAATAGTTTCTTCTCTGGACAAATGAGAAGAGCATGTAGTGCAGGAGATTTGCAGAATATGAAAACAATAGTAACACATGAGTCTCAAACGGAGGAAGCAAATTTCAAAGTAGGGCGTTATAGTGCGGAAGAAAGAAAAGAAAAAATCTCAAAATACAGAGCAAAGAGAAGCCAGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAAACACTAGCCGACAATCGAACACGCATACGTGGCAGATTCGCACGTAACGACGAAACCAACGACATTCCAAAACCTCAATCTTCAAAAATAGATGAATACCAACAAGAGTTCTGGGTTGATCTCATTGAAGGGTTAAATGACGAGTATCTCCTTTGA 786 0.3651 MSSDIDISYPFNFIDVVQEDFNNSLDPFSSCFFSFSSSSSSPTNNHILPLTNSSALDESRVKTEEYCQMSVEDYPNKHHFLSHSCSGDETDQSASKLMQRRSYSCNNFHDKPDFPFEANYHNTLMDSPDFQWHEFNSPENSFFSGQMRRACSAGDLQNMKTIVTHESQTEEANFKVGRYSAEERKEKISKYRAKRSQRKFNKIIKYACRKTLADNRTRIRGRFARNDETNDIPKPQSSKIDEYQQEFWVDLIEGLNDEYLL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00215 261 ProSiteProfiles CCT domain profile. 184 226 IPR010402 GO:0005515
Car08g00215 261 Pfam CCT motif 184 226 IPR010402 GO:0005515
Car08g00215 261 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 259 IPR045281 GO:0009909
Car08g00215 261 PANTHER CCT MOTIF FAMILY PROTEIN 23 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00215 Car-Chr8 1685487 1687046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00215 180 231 C2C2-CO-like Transcription Factor Family AT5G24930 48.077 4.23e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car08g00215 CCT 9.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00215 - - mtr:MTR_5g010120 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00215 08 1685487 1687046 Car08g00215 08 1685487 1687046 ECH
Car08g00215 08 1685487 1687046 Car06g00506 06 5133100 5134592 PCT