Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00214 ATGGGGTTTCCTACAGAGATAGTGTTGCCAAAGGTGTTTGTACATCTCCTTACCGTATTGGGTTTGATCAGAAAACTCGTTACCATCCTGAGTCTCAATTCGGACATTGAAATACTTTCTGTGGTAAACTTCTCCGACTTGAAACTGTCGGTTGTAGACTGCTCTCCTCATAGCCCCTGTTCCGTCTGCCTCTACGATTTCAAACCAGAGGATGAGATCCGACGGCTCACAAACTGCCGTCACATTTTTCACAGAACCTGCCTTGACCGTTGGATGGGTTACGATCACAAGACATGCCCTTTGTGTCGTACACCCTTCTTACTTCCTAATCCTACCCAATCCATCACATGCAAGATACCTTTCTAG 366 0.459 MGFPTEIVLPKVFVHLLTVLGLIRKLVTILSLNSDIEILSVVNFSDLKLSVVDCSPHSPCSVCLYDFKPEDEIRRLTNCRHIFHRTCLDRWMGYDHKTCPLCRTPFLLPNPTQSITCKIPF 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00214 121 SUPERFAMILY RING/U-box 59 113 - -
Car08g00214 121 PANTHER BRH1 RING FINGER PROTEIN 37 110 - -
Car08g00214 121 ProSiteProfiles Zinc finger RING-type profile. 60 103 IPR001841 -
Car08g00214 121 Pfam Ring finger domain 60 103 IPR001841 -
Car08g00214 121 PANTHER RING ZINC FINGER PROTEIN-RELATED 37 110 - -
Car08g00214 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 107 IPR013083 -
Car08g00214 121 CDD RING-H2 60 103 - -
Car08g00214 121 SMART ring_2 60 102 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00214 Car-Chr8 1682223 1682836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00214 1 107 C3H Transcription Factor Family AT1G63840 46.479 2.68e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00214 K16281 - cam:101492941 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00214 08 1682223 1682836 Car08g00214 08 1682223 1682836 ECH
Car08g00214 08 1682223 1682836 Car06g00504 06 5110062 5110885 PCT