Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00207 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATTAGATATATTACTACTCATGGATATGGTTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGTTTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGCCTTCATGGGGTTGTTGGAAACAGATGGGCTCACATtgcaagccacttgcctggtagaactgacaatgaaataaaaaactattgGAATTCATGGATCAAAAAGAAAATAAGAAAATCTAATTCTAATTCTGCTCCTTCATCAATCACCAGTACCGTTAATGCACCAAGTACTGTTGATCATCATCATCCTCATTTCAATTATAATTCCAACCAACTAGATAATTACTTCACCAACCAAGAAACTATAACAACAAAACCAGAAACCTTATTCTCTTCAACATGCCCTTTATTTATGTTTGACACAAGCTCACTAGATCATGTGACAACAACAACAACAGACACCATTCATAATGCAAGACCAGAAGTACTCTTCCATGATACTATGATGAGTTTGAGCTCTGAAACATGGAACATGAatcaccaccatcatcatcatcaAATTCAGACCCTGATTCCTCCTCATTCTGCAGCAACAGGTTTTACAGCAGCTGCAGCCATTCATCATGATACTAGTAATTATCTTCCACCATTAATAGAGAATGTGGAAAACTTTGTGCCAATTCATCATGAAGTGCAGTCATGTAATATGGATCATGAAGAAGGAGATGTGACATTGGAGTCTTTGCAGAGACAAGAGTTGAATGAATGGGTGGAAACTCAACAACAATGTCCTAACTTTATTTTCTGGGAGAGTGCTGAAGAAGAGCAAGTACTACCACCAAACTCATCATCGTCAAATATGGGAATTACAAATTCACTCTCTCCCTTTCCTTCTTCTTATAATTAA 1026 0.3548 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSNSNSAPSSITSTVNAPSTVDHHHPHFNYNSNQLDNYFTNQETITTKPETLFSSTCPLFMFDTSSLDHVTTTTTDTIHNARPEVLFHDTMMSLSSETWNMNHHHHHHQIQTLIPPHSAATGFTAAAAIHHDTSNYLPPLIENVENFVPIHHEVQSCNMDHEEGDVTLESLQRQELNEWVETQQQCPNFIFWESAEEEQVLPPNSSSSNMGITNSLSPFPSSYN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00207 341 CDD SANT 69 112 IPR001005 -
Car08g00207 341 Gene3D - 69 134 - -
Car08g00207 341 PANTHER MYB TRANSCRIPTION FACTOR 1 339 - -
Car08g00207 341 CDD SANT 17 61 IPR001005 -
Car08g00207 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car08g00207 341 Gene3D - 6 66 - -
Car08g00207 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car08g00207 341 PANTHER MYB DOMAIN PROTEIN 55 1 339 - -
Car08g00207 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car08g00207 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car08g00207 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car08g00207 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car08g00207 341 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car08g00207 341 SMART sant 66 114 IPR001005 -
Car08g00207 341 SMART sant 13 63 IPR001005 -
Car08g00207 341 MobiDBLite consensus disorder prediction 317 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00207 Car-Chr8 1649769 1652989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00207 1 328 MYB Transcription Factor Family AT1G63910 51.762 3.88e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g00207 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00207 K09422 K02947 gmx:100803556 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00207 08 1649769 1652989 Car08g00207 08 1649769 1652989 ECH
Car08g00207 08 1649769 1652989 Car06g00497 06 5022579 5024313 PCT