Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00202 ATGGCGAAGGAACTTGAGAACAAAGCCAAAGAAGCGTTCTTCGATGACGATTTTGCCCTCGCCGTTGATTTCTACTCTCAGGCCATTCAATTCGATCCCACCAACGCTAATCTCTTCGCTGACAGAGCTCAAGCCCATATTAAACTCAACGCTTTCACTGAAGCTGTTGCCGATGCTAACAAGGCTATTCAACTAAACCCTTCCTTATCAAAGGCTTATCTTCGTAAAGGGACTGCTTGTATTAATTTGGAAGAATATCATACTGCAAAAGTAGCATTGCAGAATGGTGCCTCTTTTGCTCCTGATGATTCCAGATTCACTAATTTGATTCAACAATGTGAACGCTACATTGCTGCTGAGGAATCAGAAAGTCTTACTAGCATCCTACCACCAAATGGACCCAAAACATCTGTAGCGACTGTTGATGATACTCATGTGTGTGATAGAAGTGATGGTACATCCAAAGAATCACATAGAAACAGTCCTGCATCCCAAACAAATGAAACTGCAACTGCGCCAATAAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATACCAGCAGAAAATGTGACTGTGGACTTCGGTGAACAAATTCTGAGTGTTACCATTGATGTTCCTGGCCAAGATGCCTATCATTATCAACCGCGATTGTTTGCAAAGATAATACCTGATAAGAGCAAAGTTGTGGTGTTGACAACCAAAATTGAGATACGTTTGGCAAAAGCTGAAACTGTTAATTGGACATCTCTGGAATATAGCAAGGATGTGCTTCCCCAGAAGATAAGCGTGCCTACAATTCAATCTGAAAGGCCTGCATATCCATCGTCAAAGGCGAGGACTAAAGATTGGGATAAATTGGAAGCTCAAGTGAAAAAAGAGGAGAGTGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATCTACCAAAATGCAGATGAGGACATGAGGAGAGCGATGAGCAAGTCATTTCTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGGCATGGAGGTGAAGAAATGGGAGTATTGA 1131 0.4191 MAKELENKAKEAFFDDDFALAVDFYSQAIQFDPTNANLFADRAQAHIKLNAFTEAVADANKAIQLNPSLSKAYLRKGTACINLEEYHTAKVALQNGASFAPDDSRFTNLIQQCERYIAAEESESLTSILPPNGPKTSVATVDDTHVCDRSDGTSKESHRNSPASQTNETATAPIRPKYRHEYYQKPEEVVVTIFAKGIPAENVTVDFGEQILSVTIDVPGQDAYHYQPRLFAKIIPDKSKVVVLTTKIEIRLAKAETVNWTSLEYSKDVLPQKISVPTIQSERPAYPSSKARTKDWDKLEAQVKKEESEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00202 376 MobiDBLite consensus disorder prediction 356 376 - -
Car08g00202 376 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Car08g00202 376 PANTHER PROTEIN SGT1 HOMOLOG A 1 376 - -
Car08g00202 376 MobiDBLite consensus disorder prediction 126 175 - -
Car08g00202 376 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Car08g00202 376 PANTHER PROTEIN SGT1 HOMOLOG 1 376 IPR044563 GO:0051087
Car08g00202 376 Pfam SGS domain 294 374 IPR007699 -
Car08g00202 376 ProSiteProfiles SGS domain profile. 285 376 IPR007699 -
Car08g00202 376 SUPERFAMILY HSP20-like chaperones 167 271 IPR008978 -
Car08g00202 376 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Car08g00202 376 Pfam CS domain 179 254 IPR007052 -
Car08g00202 376 ProSiteProfiles CS domain profile. 175 264 IPR007052 -
Car08g00202 376 SMART tpr_5 2 35 IPR019734 GO:0005515
Car08g00202 376 SMART tpr_5 70 103 IPR019734 GO:0005515
Car08g00202 376 SMART tpr_5 36 69 IPR019734 GO:0005515
Car08g00202 376 MobiDBLite consensus disorder prediction 157 172 - -
Car08g00202 376 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Car08g00202 376 CDD p23_CS_SGT1_like 181 264 - -
Car08g00202 376 Gene3D - 176 267 IPR008978 -
Car08g00202 376 MobiDBLite consensus disorder prediction 142 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00202 Car-Chr8 1609182 1613133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00202 1 108 U-box Gene Family AT3G07370 30.556 1.72e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00202 K12795 - gmx:100784022 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00202 08 1609182 1613133 Car08g00202 08 1609182 1613133 ECH