Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00190 ATGACTTTCAAAAAACACATTCACCATTTCAATGTTACCAAAGAACAAACTCTCAACCAACCGTATCCCAAACTTGTCAGAATAACTGTAACAGACGAAGATGCTACAGATTCATCCAGCGACGAAGAAGAACCTTCAAACCGTAACAGAGGTAAAAAGATTATCAACGAGATTGTTATAGAGCCATGCGTGAACGAGAATAACGCCGCCTCCTCCGGCGTTGTTTCCAGGAAGAGAAACAGAGCCACCGGCCGCGGAAAAACAAGAGTTCCGGCGAGTCGGCTAGTTTCATACTCCGGGAAGAAATACCGGGGAGTTAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGGCGCGTGGCGTGCGAGTGTGGCTTGGTACGTTTGAAACTGCGGAGGAAGCCGCTATGGTGTACGACAACGCGGCTATTAAGATGCGTGGACCAGACGCGCTAACTAATTTTATAACTCCACCTGCCACGTGTCAACTATTATCGTCTGAAAATAAAAATCAAAAGGCTCATAATCCACCGTTACCGGGAAATAACGGTTACAATTCCGGTGAAGAATCACAAAACAAGAGTAGTATATTTTCTCCAAATTCGGTTCTACAGTGTTGTTCATCCTCCGAGGAAGTAGCTGATTCTTCCGTTATAACGAGTAAAGACGATGAATGTTCCTACGTGGCAAGTAAGGTTGAATCTGAATCACGGTTTTCGATTCCGAGTGATTTAATGTTTGATTTTCAAGTTTCTTCTTCACTAGCGAATGATGCGTTTGAAAACTTGAATAGCAACATTTTCTACGGTGACATTGATTGGAATGGTTCCTCTGAGGTTTTCGATTTCGGTTTAGAAAGTTTTATTACACACAGGGAACGTGATATTTTTCAAGATATTGACGATTTATTCGCTTCTGATCCTCTTCTTGCTCTTTAA 948 0.4335 MTFKKHIHHFNVTKEQTLNQPYPKLVRITVTDEDATDSSSDEEEPSNRNRGKKIINEIVIEPCVNENNAASSGVVSRKRNRATGRGKTRVPASRLVSYSGKKYRGVRQRPWGKWAAEIRDPARGVRVWLGTFETAEEAAMVYDNAAIKMRGPDALTNFITPPATCQLLSSENKNQKAHNPPLPGNNGYNSGEESQNKSSIFSPNSVLQCCSSSEEVADSSVITSKDDECSYVASKVESESRFSIPSDLMFDFQVSSSLANDAFENLNSNIFYGDIDWNGSSEVFDFGLESFITHRERDIFQDIDDLFASDPLLAL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00190 315 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Car08g00190 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 7 311 - -
Car08g00190 315 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Car08g00190 315 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Car08g00190 315 Gene3D AP2/ERF domain 101 160 IPR036955 GO:0003700|GO:0006355
Car08g00190 315 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Car08g00190 315 CDD AP2 101 158 IPR001471 GO:0003700|GO:0006355
Car08g00190 315 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
Car08g00190 315 MobiDBLite consensus disorder prediction 170 199 - -
Car08g00190 315 MobiDBLite consensus disorder prediction 32 51 - -
Car08g00190 315 MobiDBLite consensus disorder prediction 69 91 - -
Car08g00190 315 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 311 - -
Car08g00190 315 SUPERFAMILY DNA-binding domain 102 158 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00190 Car-Chr8 1491562 1492926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00190 24 314 AP2-EREBP Transcription Factor Family AT4G27950 39.936 1.07e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g00190 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00190 - - mtr:MTR_5g009620 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00190 08 1491562 1492926 Car08g00190 08 1491562 1492926 ECH
Car08g00190 08 1491562 1492926 Car06g00469 06 4720686 4721474 PCT