Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00182 ATGAACGGAATGCAAAACAGAAACACACATGAATTACAAGAAAGTAGCGATATTGGTTCATGTTTATCAAATCTAATATTATCAAGTGGAACAAACACACTAGACTCAATTTTCTGTGATATTCCTTCATCAACAAACACAAACTACTTACAACCCTTTGGTTCTTCAAATTTTCAGCCATTAGGTTCCTCTGTTTACATTCGCCAAAGAGATATCCTTCAAAAATTCTACGAAGAAACTCGATTAAACAACTCTTTGGTTCCATCTTCCTTTACAATTCCATCACTAAACAGTTCTTTATACACAACGAATTCGCTCAGTTCTTTGGTGAACCCTTGTAAGAAAAAACAGTACAGAGGAGTGAGACAGAGACATTGGGGAAAATGGGTCGCTGAGATTAGACTTCCTCAGAATAGAATGAGAGTTTGGCTTGGAACTTACGAAACTGCAGAAGCTGCAGCTTATGCTTATGATCGTGCTGCTTATAAGCTTCGTGGTGAATACGCGCGTTTGAATTTTCCTAATTTGAAGGATCCAACTAAGTTGGGTTTTGGAGATTCTAATAGATTGAATGCTTTGAAGAGTTCTGTGGATGCTAAAATTCAAGCTATTTGTCAAAAGGTGAAAAGGGAAAAAGCTAAAAAGATTGCTGCAAAGAAGCTTAAAAAGAATTTATTAGAGAAGATTAAAATCtcatcttcttgttcttgttcttcttcgtcttcGATTTTTGATCAAGATTGGGCGAATGATTTGTTCTCGCCGAGTGTTTCCGAGGATGGTGTTTGGATAGGGAACAATTCACCGAATTCTGTTTCGACAATGGTGGCAGAGGAAACAGAGTTCGAAGGTTGTTCTTTGGCAAAAATGCCATCTTTTGATTTTGATTTGATTTGGGAAGGTTTGCCTGTTTAG 915 0.3585 MNGMQNRNTHELQESSDIGSCLSNLILSSGTNTLDSIFCDIPSSTNTNYLQPFGSSNFQPLGSSVYIRQRDILQKFYEETRLNNSLVPSSFTIPSLNSSLYTTNSLSSLVNPCKKKQYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSNRLNALKSSVDAKIQAICQKVKREKAKKIAAKKLKKNLLEKIKISSSCSCSSSSSIFDQDWANDLFSPSVSEDGVWIGNNSPNSVSTMVAEETEFEGCSLAKMPSFDFDLIWEGLPV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00182 304 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Car08g00182 304 SUPERFAMILY DNA-binding domain 117 174 IPR016177 GO:0003677
Car08g00182 304 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Car08g00182 304 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Car08g00182 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 266 - -
Car08g00182 304 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Car08g00182 304 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Car08g00182 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 266 - -
Car08g00182 304 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Car08g00182 304 CDD AP2 116 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00182 Car-Chr8 1429538 1430697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00182 16 302 AP2-EREBP Transcription Factor Family AT1G64380 46.687 2.40e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g00182 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00182 - - lja:Lj0g3v0046879.1 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00182 08 1429538 1430697 Car08g00182 08 1429538 1430697 ECH