Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00177 ATGTCTACCTTGAAATTTTCTTTCTTATTTTCCATAGTATTTTTTCTTTTTCACTCAACAAGAAGCACAATTCCAGCTTGTGACAAAAGATATTGTGGAAACTCTGAATTACAACAACTTTTTGAGTTCCCTTTTTTATTAAGAGAAGAAAATCATTTTACCAATAATCAAAGTGATCGATGTGGGTACCCAGGATTTGAAATTTTTTGCAACAATAAGAATCAAGCTTTACTTACACTATCAAATTCAAGAGAATTTGTAGTCAAATTTATTTCCCTTGAGAGACGAAGAGTTTGGGTCAACGATCCCAATGAATGTCCACCTAAACGGTTCCTTCAAAACATATTCCTTAACAATGATTCACCTTTTCAATTGGACAACACATATCATAGTAACTATGAAAATGTTACATTTGTCAATTGTACAGGTTTTACAAAGGAACCAATGATTCATGATGATGATTTTATTATACCTTGTCTAAGCAATGAGAAATATACTATCATGTATACTTTACAATCGCCTATTGATTTATGGATTAATAGATCGTGTCGTGAAATTGGTTTTGCTATGGTTCCGGTGAAAGATAATTCTAGTGAACCACGAGTAATCATGGAAGGACTTTACTCTGATATTTTGTTGAGATGGAATAAACCTCTATGTGACTGTGCAGCAGACCAATTTTGTGGATTTGAAACGGATACGGGTCTTGATGTTACTTGTTACGACTACAATGATTTTAATCAACCAGGTGGAAATCCTTCAAATCCAAGGCACAAAAATATGTACTTTTTTCCAGTAGTGTGGGGAATATCTGGAGCTCTATTCTTCATATGGGTAATTGTATCCATATGTAAAGATAGAAGGCAAAACCATATCCAACAAAATCAAACAATTACGAACATAGAATCAAATAACGGGGAACCCCCTTGGTTTGTGTTTGGGCTTGATCGATCAAGAATAGAAGAATATTATCCAAAGATTCAGGTAGCTGAGAGTGGACAATTACCTAAGTCCATTGACAATGTTTGCTCCATATGTCTTAGTGAGTACAAGCCCATGGAGACATTAAGGAGTATGCCCCAATGTAATCATTATTTTCATGCTGATTGTATAGATGTGTGGCTCAAGATGAATGCTACTTGCCCTTTATGTCGAAATTTGCCCGAGTGA 1170 0.3479 MSTLKFSFLFSIVFFLFHSTRSTIPACDKRYCGNSELQQLFEFPFLLREENHFTNNQSDRCGYPGFEIFCNNKNQALLTLSNSREFVVKFISLERRRVWVNDPNECPPKRFLQNIFLNNDSPFQLDNTYHSNYENVTFVNCTGFTKEPMIHDDDFIIPCLSNEKYTIMYTLQSPIDLWINRSCREIGFAMVPVKDNSSEPRVIMEGLYSDILLRWNKPLCDCAADQFCGFETDTGLDVTCYDYNDFNQPGGNPSNPRHKNMYFFPVVWGISGALFFIWVIVSICKDRRQNHIQQNQTITNIESNNGEPPWFVFGLDRSRIEEYYPKIQVAESGQLPKSIDNVCSICLSEYKPMETLRSMPQCNHYFHADCIDVWLKMNATCPLCRNLPE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00177 389 ProSiteProfiles Zinc finger RING-type profile. 343 385 IPR001841 -
Car08g00177 389 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 5 388 - -
Car08g00177 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 388 IPR013083 -
Car08g00177 389 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 388 - -
Car08g00177 389 Pfam Wall-associated receptor kinase galacturonan-binding 27 102 IPR025287 GO:0030247
Car08g00177 389 Pfam Ring finger domain 342 385 IPR001841 -
Car08g00177 389 CDD RING-H2_PA-TM-RING 342 385 - -
Car08g00177 389 SUPERFAMILY RING/U-box 342 386 - -
Car08g00177 389 SMART ring_2 343 384 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00177 Car-Chr8 1372830 1374142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00177 27 388 C3H Transcription Factor Family AT2G46495 30.435 4.76e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00177 - - mtr:MTR_5g009190 449.899