Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00163 atGGGTTCATATGAAGCAACAAATGTGGTTCTCTCTAAAGTCAAAAACTTTGACCCTGAAAATGCATCAAAAATCATGGGTTATATTTTGATGAATCTTGAAGAATATGAATTAGTACGTTTAGCATGTTGCCCTGACCATGTTCTTCACAATCTTGTTGTTAGGGTAAAGACCCATTTGGGTATGACACTCTCAACACCTTCTTCACCTTCTCCTCTTAACCCAATTTCAAGAATCACTTCAAATTCTACAAACCCATTTACAAAATCAAGAAACCCTTCTTCACCTTCTTCTAATGTTTGGCCACCACCCTCTTTCCAAAAGAACCCAATTAGTCCAAAGTTTAATCCTTTACTGTCTTTTGACAACAATAACATTCAAGGTGTTGGTGTTGGTCTTGGTGGCTCTTGTTCTTCTTCTTTCTCACCAAGGGTTATTAATAATGGTGGTGGTGGTGATTGTGATTTTGTTGATGAACAACAACTCAATGAGTATTTTCCTTTTCTTAATGAGCCCTCTAATGGTGAGGATTTGGTGGATCCACGTCTTGAAATGAATCTTGGGCCTCAGAATTGGATTTCTGGTAACAATGGTGATAATACTCATAATATTCATAGAAGGAGTTATTCTGCAAATGATGCTAGTTTTGTCTGTGAAGAAAGTGGATTAGGATTTGGTTTTAAGCCATGTCTTTACTTTGCAAGAGGGTTTTGTAAAAATGGTGCCACTTGCAAGTTTGTTCATGGGGATTCAATTGATGCTAATACAGGTGCTATTGTTGGTTCACCCTCTAAGTTTGATGGATTTGAACAGCATGAAGAGTTCTTGAGGTTTAAGGCTGCTCAGCATCAAAGAATGGTGGCTGCTTCACAACTTGCTGCTGGTGGAACCTCGCCGTCTTCGTATGACAAGTACATTGATTTTCTGATGCAGCAGCACACTGCGGCTGCAGCGGCGTTTATGATGGGCGAAGAATATTACAATATTAGTGGTCGAGGAAGGCCCGAAAGGAGTGACTTTCTCGCCATGGCAATAAACTTTGCAGAGCATGATGTATGTCTCCGATTAGAAGACAGGTTAATCCTGTACATTTTCGACAAATTTGGACCTGTCCAAGATGTACGAATTCCCTACCAGCAGAAGCGTATGTTTGGGTTTGTTACCTTTGTCTTTCCAGAGACAGTGAGAATCATATTATCGAAAGGGAATCCTCACTTCATATGTGATTCACGCGTGCTTGTTAAACCCTACAAGGAGAAGGGAAAAGTTCCTGACAAGAGACAACAACATCAACACCAGCAACTGGAGAGGGGAGATTTTTCACCGTGTTTAAGTCCCTCCTCGTTTGACTCTAAAGAACATTTTGATTTCCATCCAGGCAATCGGATGTTATTTAATACGCATGAGATCTTATTGAGAAGGAAAATGGAGGAGCAGGCTGAGTTGCAGCAAGTCCTTGAACTCCAAGAAAGGAGGCTGAAGAGTCTGCAGCTTCCGGACTTCAAGAATAATCCGATTAACCACCACCAGCGCAGTCTATCTGTTGGCGCTCCTTTGGCTTTTCCTCATCAACTTCATGGTCATGTTAACCATGCAGGTCTTTCTTCTTCTGATAACATTCATGGAGATATTACAGGCTATGGCGGCGGCCTCACTTCTACCGGTTCTTTAGGTGCTTCATTTGAGCCGCAGCAGCTACAGAAAGACGTCGGTCCAACTTGCATTGATGCTGCCGCTACTGAGAGTGGGAATATGAAGGATATTGCAAAGTCAGAAGTCGAAGAACTCAACGCTAGAAATGTGGAGCAAGCCCTTCCTGATAATCTCTTTGCTTCACCAACAAAAGCAGCCGGAGATTATCGGACTGATTTCTCCCCACTGGAAGAGGTCAATGAGAGTACTGCATTTTCATCCAACTCATCTCAAAAGTTAGAATCAACAACCGCCGCCACTTCGGGTGACATGGCTTCCCTTTAA 1977 0.4213 MGSYEATNVVLSKVKNFDPENASKIMGYILMNLEEYELVRLACCPDHVLHNLVVRVKTHLGMTLSTPSSPSPLNPISRITSNSTNPFTKSRNPSSPSSNVWPPPSFQKNPISPKFNPLLSFDNNNIQGVGVGLGGSCSSSFSPRVINNGGGGDCDFVDEQQLNEYFPFLNEPSNGEDLVDPRLEMNLGPQNWISGNNGDNTHNIHRRSYSANDASFVCEESGLGFGFKPCLYFARGFCKNGATCKFVHGDSIDANTGAIVGSPSKFDGFEQHEEFLRFKAAQHQRMVAASQLAAGGTSPSSYDKYIDFLMQQHTAAAAAFMMGEEYYNISGRGRPERSDFLAMAINFAEHDVCLRLEDRLILYIFDKFGPVQDVRIPYQQKRMFGFVTFVFPETVRIILSKGNPHFICDSRVLVKPYKEKGKVPDKRQQHQHQQLERGDFSPCLSPSSFDSKEHFDFHPGNRMLFNTHEILLRRKMEEQAELQQVLELQERRLKSLQLPDFKNNPINHHQRSLSVGAPLAFPHQLHGHVNHAGLSSSDNIHGDITGYGGGLTSTGSLGASFEPQQLQKDVGPTCIDAAATESGNMKDIAKSEVEELNARNVEQALPDNLFASPTKAAGDYRTDFSPLEEVNESTAFSSNSSQKLESTTAATSGDMASL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00163 658 Gene3D - 355 441 IPR012677 -
Car08g00163 658 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 249 IPR000571 GO:0046872
Car08g00163 658 SUPERFAMILY CCCH zinc finger 227 249 IPR036855 GO:0046872
Car08g00163 658 Coils Coil 472 492 - -
Car08g00163 658 SUPERFAMILY RNA-binding domain, RBD 359 437 IPR035979 GO:0003676
Car08g00163 658 MobiDBLite consensus disorder prediction 631 658 - -
Car08g00163 658 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55 1 657 - -
Car08g00163 658 SMART c3hfinal6 226 250 IPR000571 GO:0046872
Car08g00163 658 ProSiteProfiles Zinc finger C3H1-type profile. 224 251 IPR000571 GO:0046872
Car08g00163 658 MobiDBLite consensus disorder prediction 63 107 - -
Car08g00163 658 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00163 Car-Chr8 1258270 1262472 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car08g00163 zf-CCCH 9.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00163 - - gmx:100778061 733.021