Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00161 ATGGGGTGCATATGCTCAAAAGACTCAAACAAAGACAAAGTTGAAGAATATGAGAAAGAAATAGAGTTGAATAAGTCTTCAGTGCAATTAGTTGCTCCTACACATTTGAATGGAGGTGTAAATGGCATTAGCATGAATGATTATAATTCAGTGCCTCGTTTGGAAAAAGCAACCTCACAAGTGTTTCAAAGAGGTGAAGAAAAAAACATTCAGTTAGATGTCACAAAAAGCCAACATCAAAGATGTATGACAATGAGTTCTGGTATAGGTGAAAGAAAGCCACTAATGAGTAGAATACTTAGTGTGCAAAATTTTGCTGCAGAACATCACATTGATGCTGGATGGCCATTTTGGTTGTCTTCAGTTGCAGGAGAAGCTATCAAAGGGTGGGTTCCTCGAAGGGCAGACTCTTTTGAAAAATTACACCAAATTGGACAAGGGGCATATAGTAGTGTGCATAAAGCTCTTGATCTTGAAACTGGTAAATATGTCGCTTTGAAGAAAGTTCGATTTTCAAGCGGAGACGCGGAAAGTGTCCGTTTCATGGCAAGGGAAATTTATATTATGCGTCAACTTGACCATCCTAATATCCTCAAACTTGAAGGTCTTGTGACATCTAGAACTTCCAGCAGTTTGTACCTTATTTTTGAATACATGGAGCATGACCTTGCAGGACTAGCAGCTAGACCTGGTGTTAAGTTCACTGAACCACAGATTAAATGTTACATGAAACAACTACTTTGTGGGCTTGAACACTGTCATAGTAAGGGTGTGTTGCACCGCGATATAAAGGGTTCTAACCTTCTAATCGACAACAATGGAAATCTTAAGATTGGAGATTTTGGTCTTGCAACGGTTTATGAACCTAATAGCAAGTTGCCGTTGACAAGTCGCGTTGTGACTCTATGGTACAGGGCACCTGAACTTTTGCTAGGTGCTACTGACTATGGCGTCGCAATTGACTTGTGGAGTGTTGGTTGCATTATAGCAGAATTGTTGGTGGGTAAGCCTATCATGCCTGGAAGGACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGTGGTTCTCCATCTGAAGACTATTGGCAGAGAACAAAACTTCCGTATGCAACAAGTTATAAACCACAAAATTCTTACAAAAGACAAGTCACAGATACATTTAAAAATTTCCCTTCTTCTGCATTGACACTTGTTGATAAACTACTTTCAATGGAACCTGCAGAACGAGGATCTGCAACTTCTGCACTTAAGAGTGAGTTCTTCACTACAGATCCTCTACCTTGTGATCCTTCAAGTATGCCAAAGTTTCCACCAAGCAAGGAGTTTGATGTCAAGCGTCGAGATAAAGAATCGATAAGAAAAAATACTGAAGCTATTCAAGGACGTGGGCCGGTAACTGTTTTAAGGGGAGCTGGAAATACCAAAGCATTGGAAACACCAGAGTATAATGCTCCAGGAGATATGTCTTTGCGGGGAAAGTCAAATATTAGAACGTCTCGTTTTAAATATGAATTCCAAGAAGACGATGAGACTAACCACAAGTGCGAACCTAGCAGAATATCTATGCATAATGGCTATACACATTCTACAACAGGACCATCCTCTTTGAGTAAGAGGCCAGAATCATCTTGGAAGAATATTCCAGAGTTAAGGACACAAAGGTCTAATTTGAATCAAGCAACAATTGATTCCGCTAACATTTTTATTAAAAAGGAACAAGAACAAGAACAAGGCATGTCAGGCCAAGAAACTGGGATGGGGTACAAGCCAAAGAAAAATAGAATTCATTGTTCTGGACCATTGATGCCTCCAGGTGGCAATATTGATGACATGCTCAAAGAACATGAACGTTTAATGCAAGATGTTTTTCGGAGTGTCAAGAAGGCTAATCAATAA 1899 0.3965 MGCICSKDSNKDKVEEYEKEIELNKSSVQLVAPTHLNGGVNGISMNDYNSVPRLEKATSQVFQRGEEKNIQLDVTKSQHQRCMTMSSGIGERKPLMSRILSVQNFAAEHHIDAGWPFWLSSVAGEAIKGWVPRRADSFEKLHQIGQGAYSSVHKALDLETGKYVALKKVRFSSGDAESVRFMAREIYIMRQLDHPNILKLEGLVTSRTSSSLYLIFEYMEHDLAGLAARPGVKFTEPQIKCYMKQLLCGLEHCHSKGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYEPNSKLPLTSRVVTLWYRAPELLLGATDYGVAIDLWSVGCIIAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKLPYATSYKPQNSYKRQVTDTFKNFPSSALTLVDKLLSMEPAERGSATSALKSEFFTTDPLPCDPSSMPKFPPSKEFDVKRRDKESIRKNTEAIQGRGPVTVLRGAGNTKALETPEYNAPGDMSLRGKSNIRTSRFKYEFQEDDETNHKCEPSRISMHNGYTHSTTGPSSLSKRPESSWKNIPELRTQRSNLNQATIDSANIFIKKEQEQEQGMSGQETGMGYKPKKNRIHCSGPLMPPGGNIDDMLKEHERLMQDVFRSVKKANQ 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00161 632 SUPERFAMILY Protein kinase-like (PK-like) 131 430 IPR011009 -
Car08g00161 632 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Car08g00161 632 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 54 627 - -
Car08g00161 632 SMART serkin_6 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00161 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Car08g00161 632 MobiDBLite consensus disorder prediction 575 611 - -
Car08g00161 632 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00161 632 Gene3D Transferase(Phosphotransferase) domain 1 221 462 - -
Car08g00161 632 MobiDBLite consensus disorder prediction 523 544 - -
Car08g00161 632 Gene3D Phosphorylase Kinase; domain 1 125 220 - -
Car08g00161 632 PANTHER CELL DIVISION PROTEIN KINASE 54 627 - -
Car08g00161 632 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00161 632 MobiDBLite consensus disorder prediction 507 544 - -
Car08g00161 632 CDD STKc_CDK9_like 138 422 - -
Car08g00161 632 Coils Coil 613 632 - -
Car08g00161 632 MobiDBLite consensus disorder prediction 428 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00161 Car-Chr8 1244704 1248037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00161 130 459 Core Cell Cycle Gene Families AT5G10270 52.601 6.33e-121 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car08g00161 Pkinase 4.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00161 K08819 - gmx:100791743 862.833